Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq12086 147 6e-31 seq6146 111 4e-20 >seq12086 Length=38917 Score = 147 bits (162), Expect = 6e-31 Identities = 322/479 (67%), Gaps = 5/479 (1%) Strand=Plus/Plus Query 16523 TGCTGGTGGATGTGCCCGTGGTATTTCCTCGCGGCGGTGGCTGCACCTTAACTTTTCCGG 16582 ||||||||||||| || || | || ||||| || |||||| || ||||| ||||| Sbjct 34263 TGCTGGTGGATGTACCTGTTATTTTCCCTCGAGGAGGTGGCGCAACATTAACCTTTCCAA 34322 Query 16583 TGAAAGCAGGCGACGAATGCCTGGTAATTTTTTCCGATCGCTGCATCGATTTCTGGTGGC 16642 | |||| || || || ||| | || || || | || || ||||| |||| ||||||| Sbjct 34323 TTAAAGTCGGTGATGAGTGCTTAGTCATATTCGCTGACCGTTGCATTGATTATTGGTGGC 34382 Query 16643 AGAACGGCGGGGTACAGGAGCCTGTCGACGATCGGGTGCATGATTTATCGGATGCGTTCT 16702 | | || || | ||||| | || ||| |||| ||| |||||||||||| ||| | Sbjct 34383 AAAGTGGTGGTATTCAGGAAGCAGTAGACCCTCGGAAACATAATTTATCGGATGGGTT-T 34441 Query 16703 GTA-TCGTCGGGCCGCAGTCGCAGGCGCAAAAAATAAGCGGAATAAGTACGGGGGCCGCG 16761 | | | ||||| || || || || ||||||||||| |||||||| ||||| | | Sbjct 34442 GCATTAGTCGGCCCTCAATCACAAGCGCAAAAAATTAGCGGAATTAGTACCTCTGAAGTT 34501 Query 16762 CAATTGCGTACCGATGATGGGGCTGCGTTTGTGGAAGTGGCTGCAGGCCATA---ACATC 16818 || | || | ||||| || ||||| ||| | | | | || || || | Sbjct 34502 CAGCTACGAAGTGATGACGGTAGTGCGTATGTTGCTATTAATACGGGAAGTAAAGACGTG 34561 Query 16819 ACGGTTAAAACTACTGGTACGCTGACGGCTACTGCAGAAGGAGGAACCACGATCACGTCG 16878 || |||| || | | | || || || || ||| |||| || ||| |||| || Sbjct 34562 ACCGTTATTACCCCCGCAAAACTAACCGCAACAGCAAAAGGTGGTACCGAAATCAACTCA 34621 Query 16879 CCCAGAATCACGCTAAACGGTAACGTGACAATAAATGGAAATCTTTCTCAGGGTATGGGT 16938 || ||| | |||||||||| || ||||| || || ||| | || || |||||||| Sbjct 34622 CCAGAAATTGTGTTAAACGGTAATGTCACAATTAACGGCAATTTATCACAAGGTATGGGA 34681 Query 16939 GAGGGCGGCGGTAGCGCAACGATGCTCGGTCCTGTCACGGTGACTAATGATGTGAAGGC 16997 ||| | |||||| || | ||| || ||| | || |||| |||||||| | ||| Sbjct 34682 GAGAGTGGCGGTGAAGCCAAAATGAATGGACCTATTACTGTGAAAAATGATGTTACGGC 34740 Score = 114 bits (126), Expect = 3e-21 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 9881 TTTGGACGTGCGTTTACGGTCAACTTCACCGGCAGCAATACCACTATCACCCTGAAGTTC 9940 ||||| ||| |||||||||||| || | ||| | || ||||| ||||| |||| ||| Sbjct 26960 TTTGGTCGTATGTTTACGGTCAATTTTAACGGTAATAACACCACAATCACGTTGAAATTC 27019 Query 9941 AAGCAACTGCCTGGCATCACCTACGAAACCATCGGTACATCACAGGCGAATGCTCTGGAA 10000 || ||| |||| | | || ||||| || | |||||||| || || | || Sbjct 27020 AAACAAGAGCCTACCGTGACGGCTGAAACACTCACTGTTTCACAGGCTAAGGCGATTGAT 27079 Query 10001 GCGAAGAACTGTAACGTTTACGTGTACTACGAAAACGATACAGCCATCCTTGAACAGGGT 10060 | || | | ||||||| | || | ||| | || || || ||||| | || | || Sbjct 27080 ACTAAAAGCGGTAACGTGTTTGTAAATTACAACAATGACACTGCCATTATCCAAGAAGGG 27139 Query 10061 GTGATGTGTAACGGCGATTTCTTCGATGAGCGTCACGGGCTCGACTGGCTGCAGAACGCA 10120 |||||| ||||| ||||| ||||||||||||| ||||| || |||||||| ||| Sbjct 27140 GTGATGGCCAACGGTGATTTTATCGATGAGCGTCATGGGCTTGATTGGCTGCAAAACTAT 27199 Query 10121 GTACAGACAGCCGACTACAACACGCTTTACACCAGCACCACGAAGATCCCACAGACCGAT 10180 || || || | | ||| ||| ||||| |||| || || ||||| || || ||| Sbjct 27200 GTGCAAACCAACCTGTTTAACTTGCTCTACACTCGCACAACCAAAATCCCGCAAACGGAT 27259 Query 10181 G 10181 | Sbjct 27260 G 27260 Score = 96.9 bits (106), Expect = 9e-16 Identities = 169/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 8498 TTTGCCGGAGTTGTTACCGTTGACCGTTCACTGGAAAACCGCCGCATGCAGTCTGGGCAG 8557 ||||| || ||||| |||||||||||||| || ||| || ||| | | |||||| Sbjct 25270 TTTGCTGGTGTTGTGACCGTTGACCGTTCTCTCGAAGCAAAACGGATGGAAGCAGGGCAG 25329 Query 8558 GTTATCAGTGGAGCAATCCTTATCGTGACGACTGAG---CGACTCACGCAGGGGCAGACT 8614 | ||| | || || || | || || || | || || || || || || | Sbjct 25330 GCTATTGGCGGTGCGATATTGATTGTCAC---TCAGTTTCGTCTAACTCAAGGCTACCAA 25386 Query 8615 GGCCGTGATGCCGATATCGTGACGTATCAGAACCGTGATTATCGTGTGACGTTCGTCGAC 8674 || ||| ||||||||||| ||||||||| || | |||||||| ||||| || || Sbjct 25387 GGTGTTGACGCCGATATCGTCACGTATCAGGGGCGAAAGTATCGTGTAACGTTTGTTGAT 25446 Query 8675 CCGTACACCGCATATGGCGCCGGCTTTGTACAGGCGCATTGCGAGCTGCTGCCGTTTGAT 8734 || || || | || || || || ||||| ||||| |||||||| || || ||||||| Sbjct 25447 CCCTATACATCTTACGGGGCTGGATTTGTTCAGGCCCATTGCGAATTGATGGAGTTTGAT 25506 Query 8735 ggggg 8739 || || Sbjct 25507 GGAGG 25511 >seq6146 Length=11763 Score = 111 bits (122), Expect = 4e-20 Identities = 215/315 (68%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 24200 AAAGCAGAAATGACATACGGGAATATTCTTTTCCCTGGTCCGGATCTGAAAAAGTCCATG 24259 |||||| || ||||| || | || | ||||| || | | | | || || ||||| Sbjct 9727 AAAGCACTGATTACATATGGTGAAATATTATTCCCCGGACAGAACATTAATAAACCCATG 9668 Query 24260 ACTATTGCTGGTGCAAACAGATTTCTTGGAAGGATAGAATCATCCC-TGGGTATTGGCGA 24318 ||||| |||| ||| || |||| | |||| || ||| || | || | ||| || Sbjct 9667 ACTATAGCTGCTGCCAATAGATACGTAAAAAGGCTA-AATGATTCAATGAGGGTTGATGA 9609 Query 24319 ATTTTCCGCTCATGATTTTCGGCGTACACTGGCAACCAGACTTTCAGAAGAAGGTATAGC 24378 | ||| || || ||| | | ||| | || || | | || |||||||| |||| Sbjct 9608 TTGGCGCGCGCACGACTTTAGAAGAACAATCGCTACGCGCTTATCTGAAGAAGGGGTAGC 9549 Query 24379 TCCGCATGTTATTGAGAAAATGTTGGGGCATGAGCTGGGCGGCGTACTTTCTGTTTATAA 24438 |||||||| |||||||||||| | |||||||| ||| || | | |||| ||||| Sbjct 9548 CCCGCATGTAATTGAGAAAATGCTAGGGCATGAAATGGCTGGAATCATGGCTGTGTATAA 9489 Query 24439 CAAACATGACTGGATTGCTGAACAGAAAGCCGCCTATGAGCTGTACGCTGAAAAAATATT 24498 ||||| ||||||||| |||||| |||| || || || | | || || ||| |||| Sbjct 9488 TAAACACGACTGGATTAGTGAACAAAAAGATGCGTACGAAATACATGCAGATAAATTATT 9429 Query 24499 CTGGCATATCAGGAA 24513 |||||| || | ||| Sbjct 9428 CTGGCACATTAAGAA 9414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130195102943784