Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq16859 114 1e-20 seq3187 109 6e-19 seq10189 102 8e-17 >seq16859 Length=8331 Score = 114 bits (126), Expect = 1e-20 Identities = 222/324 (69%), Gaps = 3/324 (1%) Strand=Plus/Minus Query 52268 ATAATGTTTACGACAAAACGAAATATATTTATCATCACCTCCTATTTCAACAACCTCACC 52327 |||||| |||||||| | || ||||| || |||| ||| ||||| ||||| |||| Sbjct 6190 ATAATGCTTACGACATACAGAGATATACTTCTCATTACCGCCTATATCAACCTGTGCACC 6131 Query 52328 TTCTTTTACAGGATTACCGAATCTATC-ACTTTTAGCAGTATGCGTTGCTTTTCTTCCAC 52386 ||| | |||||| |||| ||| | || || | | | | ||||| | |||| Sbjct 6130 TTCGTAAACAGGAATACCATCACTACCTACACGTAATACTTTAT-TCGCTTTACGGCCAC 6072 Query 52387 AATAACAAACAGCTTTAAGTTCTTCTAATTTATCTGCCCATGACAATAAAGCGGCAGAGC 52446 | |||||||| | |||||| || | | ||||| ||||| | | |||| | | Sbjct 6071 AGTAACAAACGGTTTTAAGCTCAACAAGCTTATCAGCCCACGCAAGTAAATATTGACTCC 6012 Query 52447 CTTCGAACAGTTCACCTTTAAAATCAGTTTTTAAACCAAAACACATAACAGGAATATTAT 52506 |||| || | | ||| ||| || ||| |||| ||| |||| | |||||| |||| | Sbjct 6011 CTTCAAATAACTGCCCTGCAAAGTCTGTTCTTAAGCCATAACATAAAACAGGGATATCAC 5952 Query 52507 GGATATCAACAAATTTAGTCAATTGAATAACTTGTTGTTTTGTTAAGAATTGTGCTTCGT 52566 | ||||||||| | ||||| ||||||||||| ||||| ||||| || | Sbjct 5951 TGTTATCAACAATATCGCATAATTGCTCTACTTGTTGTTTAGTTAAAAATTGACACTCAT 5892 Query 52567 CAATAAGAACAC-ATGAAGttttt 52589 |||||||||||| ||| | ||||| Sbjct 5891 CAATAAGAACACAATGTACTTTTT 5868 >seq3187 Length=10884 Score = 109 bits (120), Expect = 6e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 137513 TTGAACACCATAATCTAAATGACGAATACGGTTTTCTTCAATACCTTTATTATTTTTAAG 137572 ||| ||||| || || | ||| |||| ||||| |||||| || || ||||| || Sbjct 7524 TTGCACACCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAG 7583 Query 137573 AACTAACAATTTTTCTAATTCAAGGTGCCACATTGGGTAATATAAAGTAGCAGAACCACC 137632 ||||||| |||| | |||||||||||| ||||||||| |||| ||||||| |||||| Sbjct 7584 GACTAACAGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACC 7643 Query 137633 TCGAATCCCACCTTGGGAACATGATTTTAC 137662 || | |||||||| || || ||||| || Sbjct 7644 ACGGACACCACCTTGAGAGCAAGATTTAAC 7673 >seq10189 Length=12531 Score = 102 bits (112), Expect = 8e-17 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 64875 GATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCCAACTGAGCTAAGTGT 64934 ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| | Sbjct 1 GATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCTAAGGGC 60 Query 64935 GCATTATTAAT 64945 ||||| ||||| Sbjct 61 GCATTGTTAAT 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518021951978640