Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq3187 122 1e-22 seq27670 93.3 5e-14 >seq3187 Length=10884 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 18511 CACACTGGTGTTATTCCATTCTGGAAACATTTCCAGACTGCTGTTAAATCGTGTTCACAA 18570 ||||| || |||||| |||| || || ||||||||||| |||||||| || || ||| Sbjct 7715 CACACAGGCTGTATTCCGTTCTACAAGCACTTCCAGACTGCGGTTAAATCTTGCTCTCAA 7656 Query 18571 GGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATCCTATGTGGCATCTTGAATTCGAA 18630 || ||||| ||||||||||| || || | | ||| || || ||||| |||||| | ||| Sbjct 7655 GGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGCACCTTGAAGTTGAA 7596 Query 18631 AAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGATGAAAACCGCATTCGTCAGCTTGAT 18690 | ||| | || |||||||| ||| || ||||| | ||||| |||| || | || Sbjct 7595 AGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAGTTCGCCATATGGAC 7536 Query 18691 TATGGTCTACAA 18702 || ||| | ||| Sbjct 7535 TACGGTGTGCAA 7524 Score = 116 bits (128), Expect = 4e-21 Identities = 145/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 20598 GTTAACGCACTGGAAGCAATTCGTTTCTATGTTTCGTTTGCTTGCACCTTTGCATTTGCA 20657 |||||||||||||||||||| || || ||||| ||||| || | || ||||| ||| Sbjct 5520 GTTAACGCACTGGAAGCAATCCGATTTTATGTCAGCTTTGCCTGTTCATTCGCATTCGCA 5461 Query 20658 GAAGATAAGAAAATGGAAGGCAGTGCTAAAATTATGCGTCTGATTGCGCGTGATGAACAA 20717 ||| | || ||||||||| | |||||||||||| |||||||| ||||||||| Sbjct 5460 GAACGTGAGCTAATGGAAGGTAATGCTAAAATTATCAAGCTGATTGCACGTGATGAAGCT 5401 Query 20718 CTGCACTTGAAAGGCACACAATATATGCTG--CGTATTTGGCAGCAAGGTAAAGATGATC 20775 | ||||| | |||||| ||| ||||| || | | || || || ||||||| | Sbjct 5400 TTACACTTAACAGGCACTCAACATATGTTGAACCTGTTACGC--TCAGTCCAAGATGACC 5343 Query 20776 CTGAAATGATCGAAATT 20792 |||||||| |||||| Sbjct 5342 CTGAAATGGCAGAAATT 5326 >seq27670 Length=3875 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 125513 GTTCTGAATCGTGAAACGCTTCAAGATGCAGTAAAACATCCTGAAAAATATCCTCAACTG 125572 ||| |||| ||||||| ||| ||| || | || | || || |||||||| || ||| Sbjct 1615 GTTATGAACCGTGAAATGCTGTTAGAAGCGATGGAAAACCCAGAGAAATATCCACAGCTG 1556 Query 125573 ACCATTCGTGTTTCTGGTTATGCAGTTCGTTTTAATGCATTGACTCGCGAACAGCAGTTG 125632 || || ||||| || ||||||||||| |||||||| || ||||| ||||| ||| Sbjct 1555 ACTATCCGTGTATCAGGTTATGCAGTGCGTTTTAACTCACTGACTAAAGAACAACAGCAA 1496 Query 125633 GACGTTATCAATCGCACGTTTACGGAAG--CTATGTAAT 125669 |||||||| | ||| || || || ||| | ||||||| Sbjct 1495 GACGTTATTACTCGTACTTTCAC--AAGTTCAATGTAAT 1459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582494412222800