Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq27670 113 5e-20 seq3187 93.3 5e-14 >seq27670 Length=3875 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101944 ACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGC 102003 ||||| || ||||||| ||| ||| || | | | || || |||||||| |||| Sbjct 1617 ACGTTATGAACCGTGAAATGCTGTTAGAAGCGATGGAAAACCCAGAGAAATATCCACAGC 1558 Query 102004 TGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGC 102063 |||| ||||||||||| ||||||||||| || |||||||| |||||| ||||| |||| Sbjct 1557 TGACTATCCGTGTATCAGGTTATGCAGTGCGTTTTAACTCACTGACTAAAGAACAACAGC 1498 Query 102064 GCGACGTTATCGCTCGTACCTTCAC 102088 |||||||| ||||||| ||||| Sbjct 1497 AAGACGTTATTACTCGTACTTTCAC 1473 >seq3187 Length=10884 Score = 93.3 bits (102), Expect = 5e-14 Identities = 115/149 (77%), Gaps = 9/149 (6%) Strand=Plus/Minus Query 25143 AACGCATTGGAAGCTATTCGTTTTTATGT-ATCTTTCGCATGTACCTTTAACTTCCATAA 25201 |||||| ||||||| || || |||||||| | |||| || ||| | || ||| | Sbjct 5517 AACGCACTGGAAGCAATCCGATTTTATGTCAGCTTT-GCCTGTTCATTCGCATTCGC--A 5461 Query 25202 GAACATGGAAATCATGGAAGGTAATGCCAAGATTATGAAGTTCATTGCACGTGATGAGCA 25261 |||| || | | |||||||||||||| || ||||| ||| | |||||||||||||| | Sbjct 5460 GAACGTG-AGCTAATGGAAGGTAATGCTAAAATTATCAAGCTGATTGCACGTGATGA--A 5404 Query 25262 GCTTCAC-CTTAA-AGGCACTCAATATAT 25288 |||| || ||||| |||||||||| |||| Sbjct 5403 GCTTTACACTTAACAGGCACTCAACATAT 5375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534447139682240