Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq3187 116 4e-21 >seq3187 Length=10884 Score = 116 bits (128), Expect = 4e-21 Identities = 187/267 (70%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 140121 AGGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAAT 140180 ||||||||| | ||||||| | ||| ||||||| |||||| | || Sbjct 7467 AGGGCTGAATAGGGTGATGTCTTGGTTCTTAATCAAACGTTCGT--ANNNNNNNNNNNAT 7524 Query 140181 TTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAG 140240 | | ||||| || || | ||||||| ||||| | ||||| || ||||| ||||| Sbjct 7525 T-GCACACCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAG 7583 Query 140241 TACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCCACC 140300 || | |||| |||| |||||||| |||||||| || || | || ||||| || ||||| Sbjct 7584 GACTAACAGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACC 7643 Query 140301 GCGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGG 140357 || | || |||||||| ||||||||||| | || || ||||| || |||| || Sbjct 7644 ACGGACACCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTG---CTTGTAGAACGG 7700 Query 140358 AATAACGCCTGTATGACGAACTTCACC 140384 |||| |||||| || | ||||||| Sbjct 7701 AATACAGCCTGTGTGGAAAGCTTCACC 7727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518380203394960