Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq21062 125 1e-24 seq23182 93.3 9e-15 >seq21062 Length=2553 Score = 125 bits (138), Expect = 1e-24 Identities = 110/132 (83%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 32397 GGCATACATTTGCCACACATTTTATAATGAATGGAGGTAACATAATCACATTGCAGCGCA 32456 ||||||| || || || |||||||| ||||||||||| | || || || |||||| | | Sbjct 1594 GGCATACTTTCGCAACCCATTTTATGATGAATGGAGGCAGTATTATTACTTTGCAGAGGA 1535 Query 32457 TCCTGGGTCATTCTAACATT-CAGCAAACTATGACCTACGCACACTTTGCACCGGA-TTT 32514 || | ||||| || |||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct 1534 TCTTAGGTCACTC-AACATTACAGCAAACACTGACCTACGCACACTTTGCACCGGACTTT 1476 Query 32515 CTTACAAGATGC 32526 ||| |||||||| Sbjct 1475 CTT-CAAGATGC 1465 >seq23182 Length=1552 Score = 93.3 bits (102), Expect = 9e-15 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 31352 AGATTTCGCAAGTACCGTGACTGGTTCATGTTTGATGAAACTGATCCCGCTGGCGGACAA 31411 || ||| | || || || || ||||||||||| ||||| || ||||||| | || ||| Sbjct 1412 AGGTTTAGGAAATATCGAGATTGGTTCATGTTCGATGAGACCGATCCCGAAGCTGGTCAA 1471 Query 31412 ATAGCCCCGGCGCTCGCGCACATTGGGCAAGACTCAACAACCTTGCACCACTCAGACCAA 31471 || || ||||| ||||| |||| ||||| ||| ||||||||| | ||| ||||| | Sbjct 1472 ATCGCACCGGCTCTCGCACACAATGGGCCAGAAACAACAACCTCACCCCATTCAGAAAAG 1531 Query 31472 AAGACTGGCTGACGAT 31487 || ||||| | || || Sbjct 1532 AAAACTGGTTAACAAT 1547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104397267327804