Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq21062 125 1e-24 seq23182 123 5e-24 seq13683 91.5 3e-14 >seq21062 Length=2553 Score = 125 bits (138), Expect = 1e-24 Identities = 110/132 (83%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 150 GCATCTTGTAAGAAA-TCCGGTGCAAAGTGTGCGTAGGTCATAGTTTGCTG-AATGTTAG 207 |||||||| |||||| ||||||||||||||||||||||||| |||||||| |||||| | Sbjct 1465 GCATCTTG-AAGAAAGTCCGGTGCAAAGTGTGCGTAGGTCAGTGTTTGCTGTAATGTT-G 1522 Query 208 AATGACCCAGGATGCGCTGCAATGTGATTATGTTACCTCCATTCATTATAAAATGTGTGG 267 | ||||| | ||| | |||||| || || || | ||||||||||| |||||||| || | Sbjct 1523 AGTGACCTAAGATCCTCTGCAAAGTAATAATACTGCCTCCATTCATCATAAAATGGGTTG 1582 Query 268 CAAATGTATGCC 279 | || ||||||| Sbjct 1583 CGAAAGTATGCC 1594 >seq23182 Length=1552 Score = 123 bits (136), Expect = 5e-24 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 1189 ATCGTCAGCCAGTCTTCTGGTCTGAGTGGTGCAAGGTTGTTGAGTCTTGCCCAATGTGTG 1248 || || | ||||| |||| ||||| ||| | ||||||||| ||| ||||| |||||| Sbjct 1547 ATTGTTAACCAGTTTTCTTTTCTGAATGGGGTGAGGTTGTTGTTTCTGGCCCATTGTGTG 1488 Query 1249 CGAGAGCCGGGGCTATTTGTCCAGCTGCTGGATCTGTTTCATCAAACATGAACCAGTCAC 1308 |||||||||| || ||||| |||||| | ||||| || ||||| ||||||||||| || | Sbjct 1487 CGAGAGCCGGTGCGATTTGACCAGCTTCGGGATCGGTCTCATCGAACATGAACCAATCTC 1428 Query 1309 GATACTTGCGAAAGCGTGGATGCTTAAACAGCTTCATACCTGCTTCCATAGGCATTTT 1366 |||| || | ||| | || || || || | ||| | || | ||| | | |||||| Sbjct 1427 GATATTTCCTAAACCTAGGGTGTTTGAATAACTTTGTTCCAGATTCAAACGTCATTTT 1370 >seq13683 Length=3702 Score = 91.5 bits (100), Expect = 3e-14 Identities = 470/722 (65%), Gaps = 51/722 (7%) Strand=Plus/Plus Query 18687 CATAAGGGCACTATTGGTGCGATTCGCCGTGTGGTGGAGCCGCTCGGCTATCTGATTGAG 18746 || || || || ||||| || | || |||||||| ||||| | || ||| | ||| | Sbjct 1295 CACAAAGGTACGATTGGCGCATTGCGTCGTGTGGTTGAGCCATTGGGTTATTTAATTCGG 1354 Query 18747 GTGAGGGAGTGGTGGCAGCTCAACGAGGAGCCG--GGGACGTTCCGCATCGTTGTTGGCG 18804 || | ||||||||| | ||||| | ||| || ||||| || | | | | || | Sbjct 1355 GTTATTGAGTGGTGGAAAACTAACGA--AACCGCCGGCACGTTTCGTCTTGATATCGGGG 1412 Query 18805 TGCTTGAGCAGGGTATTACCGAGGAAATGTATCAGGAGCT-GGAGCGTCTCGTTGCTGAT 18863 ||||||| ||||||||| || ||||||||||| ||| | | ||| | | || |||| Sbjct 1413 TGCTTGAAACGGGTATTACTGAAGAAATGTATCAAGAGTTAGAAGCAT-TGATTTTTGAT 1471 Query 18864 GCAAAACCTGCAAGCCGCCATCTGACGGGACTGGCTA-TCAGTTTAAGTACAACCGGCAA 18922 |||||||| || ||||| || || | || || ||| ||| || | ||| ||| | Sbjct 1472 GCAAAACCGGCGAGCCGTCACCTTATCGGTCTCACTATTCAACTTGA-AACACGCGGTGA 1530 Query 18923 CATTTTTGCCGGTGCGGGATGCTA-TCAC---GGCGACGCCCTGACGGTTTATCCCTACA 18978 ||||| |||| | | ||| | || || || | || ||||| ||| | || | Sbjct 1531 -ATTTT--ATTGTGC-TGCTTCTAGTTACGCGGGGGATTCGCTTACGGTCTATGCATATA 1586 Query 18979 CCCCGGAGGCCATTATTGTCGG---AGGGGATT-ATTTCCCGGCCTCGGCCATTCATTTA 19034 | || || || | || | || ||| || ||| | | | || || || ||| Sbjct 1587 CACC----ACCTTTGATTTCTGTTTCTGGCATTGATGTCCAAGGCGCAGCTATCCACTTA 1642 Query 19035 ATTGATAACCTGAGAGTAAACGCATGACAGTGAAATACTACGCCATTCTGACTAATCAGG 19094 |||||| | |||| | || | ||| ||||||||| ||| | || || || | Sbjct 1643 ATTGATGAAATGAGGATTAATCC---ACAATGAAATACTTTGCCTTACTCACAAAATTAG 1699 Query 19095 GCGCGGCACGGCTGGCTAACGCGACGATGCTCGGCAGTAAGC-TGAATCTGACGCAAATG 19153 | | | | || | ||||| ||| |||| || | ||||| | || || ||| Sbjct 1700 GTGAGAACTTATTAGCCCAAGCGACAGCGCTAGGCACAAAACTTGAAT-TAACACACATG 1758 Query 19154 GCCGTTGGTGATGCAAATGGTGTG---TTACCAACACCAGACCCTGCACAAACAAAACTG 19210 || || || |||| ||| | | || ||||| ||||| | ||||| || ||| Sbjct 1759 GCGGTGGGCGATG---GTGGCGGGAGTTTGCCAACGCCAGATACCAATCAAACTAAGCTG 1815 Query 19211 ATTAACCAGAAACGCATTGCACCGC--TGAAT---CTTCTGAGTGTTGACCCGAATAACC 19265 || || |||| || | |||| | ||| || | | || ||| | |||| Sbjct 1816 ATCAA--AGAACAGCGCCGAGCCGCCATTAATACGCTGTTTATTGATGAACAAAATA--- 1870 Query 19266 AGAGCCAGATTATTGCGGAGCAAATCATCCCTGAGAACGAGGGCGGATTCTGGATCCGTG 19325 | | || || ||||| |||||||| |||||||| || || ||||| | ||||| || | Sbjct 1871 AAAATCAAATCATTGCAGAGCAAATTATCCCTGAAAAAGACGGCGGTTGGTGGATACGCG 1930 Query 19326 AGATTGGGCTTTATGATGATGAAGGC-GTA--CTCATTGCGGTGGCAAACTGCCCGGAAA 19382 ||||||| |||| |||| ||| | ||| | |||||||| ||||||||||| || | Sbjct 1931 AGATTGG--ATTAT-TTGATAAAGCCGGTAATTTAATTGCGGTAGCAAACTGCCCCGAGA 1987 Query 19383 CG 19384 || Sbjct 1988 CG 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93400000266708