Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq13683 105 1e-18 seq12178 84.2 4e-12 >seq13683 Length=3702 Score = 105 bits (116), Expect = 1e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 11142 CACAAGGGGACTATCGGCGCAATCCGTCGGGTAGTGGAGCCACTCGGCTATGTCATCAAT 11201 ||||| || || || |||||| | ||||| || || |||||| | || ||| | || Sbjct 1295 CACAAAGGTACGATTGGCGCATTGCGTCGTGTGGTTGAGCCATTGGGTTATTTAATTCGG 1354 Query 11202 GTAACGGAATGGTGGGAAAGCGGCGAC-CCGCCAGGCACATTCCGGCTTGATATCGGGGT 11260 || | || |||||| ||| ||| ||||| ||||| || || |||||||||||||| Sbjct 1355 GTTATTGAGTGGTGGAAAACTAACGAAACCGCC-GGCACGTTTCGTCTTGATATCGGGGT 1413 Query 11261 GCTTGAAAGTGGCATTACCGAGGAAATGTATTTCGAAATGGAGCGACTGATTGCGGATGC 11320 |||||||| || ||||| || ||||||||| || | || | ||||| ||||| Sbjct 1414 GCTTGAAACGGGTATTACTGAAGAAATGTATCAAGAGTTAGAAGCATTGATTTTTGATGC 1473 Query 11321 AAAGCCAGCCAGTCGTCATCTGACTGGCCTGAATATT 11357 ||| || || || ||||| || | || || | |||| Sbjct 1474 AAAACCGGCGAGCCGTCACCTTATCGGTCTCACTATT 1510 >seq12178 Length=2234 Score = 84.2 bits (92), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 9731 GACATTCTGCTGACGCCGGTCGGCTCGCGGGTAATGCGTCGTGAATATGGCTCGCTCCTG 9790 || ||| ||| |||||| | || |||||||| ||||| || |||| ||||| || || Sbjct 1262 GATATTTTGCGAACGCCGATTGGTTCGCGGGTGATGCGCCGGCAATACGGCTCACTGTTG 1321 Query 9791 TCTGCGTTGATTGATATGCCGCAAAACCCGGCGCTCAGGCTGCAAATCATGGTGGCGTGC 9850 | || |||||||| ||| |||||||| || || | || |||| ||| |||||| Sbjct 1322 TATGACTTGATTGACCAGCCACAAAACCCTGCACTGCGACTCAAAATTATGAGTGCGTGC 1381 Query 9851 TATTCCGCGATCCAGAAGTGGGAGCCACGCATCAGGCTTAC 9891 ||| ||| | | | |||||||||||| | ||| |||| Sbjct 1382 TATATGGCGTTAATGCAATGGGAGCCACGCGTTAGG-TTAC 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94986575153940