Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq14482 156 9e-34 seq13268 136 8e-28 seq19795 129 1e-25 seq26627 86.0 1e-12 seq23182 84.2 5e-12 seq13683 82.4 2e-11 seq3741 82.4 2e-11 >seq14482 Length=29238 Score = 156 bits (172), Expect = 9e-34 Identities = 249/355 (70%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 21121 TATACGGTTGACGAGATCGGACACGCTGGCCCGCCTGACCAGCTAACGATCAGTGCCAGA 21180 ||||| ||||| || || | ||| | ||||| || ||||| | || | | ||| | Sbjct 29238 TATACCGTTGATGAAATTAGTCACTCAGGCCCTCCAGACCAAATCACAGTAACCGCCCGT 29179 Query 21181 AGCGCAGA-TTTCCGCGATACCTTCAACGTGAAAAGGGAATATAGCTGGCACGATATTAC 21239 ||||| || |||| || | | || ||||| ||| |||||||||||||||||||||| | Sbjct 29178 AGCGCGGACTTTCGGCAAGATTTT-AACGTCAAACGGGAATATAGCTGGCACGATATCAA 29120 Query 21240 CGTGGGGGATGTGGTCGCCAGCATTGCCAGCCGCTACGATCTGCGTGCGGGTGTCAGCGA 21299 || |||||||| | || || | || || | || | | || ||| | Sbjct 29119 AGTCCCTGATGTGGTGAGCGCGATAGCGGGGCGTTATAACCTAAAACCCGCAGTGAGCAA 29060 Query 21300 AGAACTGGCGAAGATTGAGATAGACCACGCCGATCAGACGAGTGAATCAGATATCAGCTT 21359 | || || | ||||| || ||||||||||| ||||| | |||| ||||||||||| Sbjct 29059 ACAATTGATACACATTGAAATTGACCACGCCGACCAGACCAATGAAAGCGATATCAGCTT 29000 Query 21360 CTTAACGCGCATGGCCGAAATGCTGGGCGCGGTGGCAACCATTAAAAACGGTATGCTTCT 21419 |||||||||||||| |||||||| |||||| | || ||||||||||| |||| | | Sbjct 28999 TTTAACGCGCATGGCTGAAATGCTTGGCGCGATAGCCACCATTAAAAATGGTAGTTTATT 28940 Query 21420 GTTTATCACGCCGGGCAAGGGAGTGACGCAGAGCGGCAAGCCGCTGCCGGTGATC 21474 |||||| ||| ||||||| || || || || || || | || |||||| Sbjct 28939 ATTTATCGTGCCTAATCAGGGAGTCACCCAAAGTGGTAAACCCTTACCTGTGATC 28885 >seq13268 Length=3871 Score = 136 bits (150), Expect = 8e-28 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23065 GGGTTTAACGTTACTGCATGTTGCAGGTAATCGGGGGCAAGGTGAGCATAAACCATCGTC 23124 || ||||| || | ||| ||||| ||||| ||||| | |||||||||| |||| ||| Sbjct 3061 GGATTTAAGGTAATAGCAAATTGCAAATAATCAGGGGCTAAGTGAGCATAAGCCATTGTC 3120 Query 23125 TGTTGTATGCTGGCGTGCCCCAGAATTTGCTGTAACGCAATAATATTTCCCCCGTTCATC 23184 ||||| || ||||||| || | ||||| || | |||| |||||| || || |||||| Sbjct 3121 TGTTGAATATTGGCGTGACCTAATATTTGTTGCAGAGCAACAATATTGCCACCATTCATC 3180 Query 23185 ATGAACCAGCTTGCGAACGTATGCCGAAGCACATGCGTGGCCTGCCCGCGTGGTAAATCG 23244 ||||| |||||||| ||||||| ||| || ||||| || || ||| ||| ||||| Sbjct 3181 ATGAAGTGACTTGCGAAAGTATGCCTAAGAACGTGCGTAGCTTGACCGTCTGGCAAATCA 3240 Query 23245 GGCTTAAC 23252 || ||||| Sbjct 3241 GGTTTAAC 3248 >seq19795 Length=1912 Score = 129 bits (142), Expect = 1e-25 Identities = 191/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 19001 GGCCGATGTTAGCGCGGTGTTTTTCTAGCACATCCACACCGGCAACTTTGTAGATCATGT 19060 |||| ||||| |||||||||||||| |||| || ||| ||||| | | ||||| Sbjct 1630 GGCCAATGTTGGCGCGGTGTTTTTCCAGCATGTCTTTGCCGTTGACTTTCCACACCATGT 1689 Query 19061 TGAGCACATCAACTTCGATGATCTCTTCGCCGTTGATGGTCAGCTTGTAATAGGTGTTTT 19120 | | || ||| ||||| | | | |||| | |||||||| | ||| | || || |||| Sbjct 1690 TTAACAAATCGACTTCAAAGGTTTCTTTGTTATTGATGGTGATTTTGCAGTACGTATTTT 1749 Query 19121 TCAGGGTGTACTTATGCGAAGTGTCATCTCCGACTTTTGCCGAACCGAGATCCAGTTCAG 19180 | | ||||| || ||| |||| ||| ||| |||| || |||| ||||| ||| | Sbjct 1750 TGATAGTGTATTTGTGCTGTGTGTTATCACCGGCTTTCGCACTGCCGAAATCCAATTCGG 1809 Query 19181 TGAAGCGGCCACGTGTCTGGATTTCGCACGGTACAGCGTCGCCGGTTGCGTCGTCCTGAT 19240 | || || || || || || ||||| ||||| || | || ||||||| || || | | Sbjct 1810 TAAAACGCCCGCGAGTTTGAATTTCACACGGAACGGATTCACCGGTTGAATCATCGTAGT 1869 Query 19241 AAGAGCCAGCAAAACGTGTTTGCATCCCGTC 19271 ||||||| ||||| || |||| | ||||| Sbjct 1870 AAGAGCCCGCAAAGCGGAATTGCTTACCGTC 1900 >seq26627 Length=3193 Score = 86.0 bits (94), Expect = 1e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 26911 ATTTCTCTATCTGAACCGCCATTGTTATAACGGTGTTTGCCGTTACAGCGAGAAGACCGG 26970 |||| | ||| | || ||||| |||||||||| ||||||| |||| | | || ||| Sbjct 2317 ATTTTTATATTTAAATCGCCACGGTTATAACGGACTTTGCCGCTACAACAAAGAGGGCGG 2376 Query 26971 CTTTAACGTGCCTTTTGGCAAGTAT-AAGAACGTCTACTTTCCTGAAAATGAAATC 27025 |||||||| || |||||||||||| || ||| | || || |||||| |||||||| Sbjct 2377 GTTTAACGTCCCCTTTGGCAAGTATAAACAACCT-TATTTCCCTGAAGATGAAATC 2431 >seq23182 Length=1552 Score = 84.2 bits (92), Expect = 5e-12 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 24089 GTTAACCAGTTTGTGTCTCTGAGCGGCCTGATCCAGTTGACTCTGGCCCAATGTGTGCGA 24148 |||||||||||| | ||||| || ||| |||| ||||||||| ||||||||| Sbjct 1544 GTTAACCAGTTTTCTTTTCTGAATGGGGTGAGGTTGTTGTTTCTGGCCCATTGTGTGCGA 1485 Query 24149 GGGCCGGTGCGATTTGACCAGCTTGTGGGGCGGTCT 24184 | |||||||||||||||||||||| || |||||| Sbjct 1484 GAGCCGGTGCGATTTGACCAGCTTCGGGATCGGTCT 1449 >seq13683 Length=3702 Score = 82.4 bits (90), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 10446 GTGGTAGAACCGCTGGACTTCGAAACGCTTTTCGCGCAGCGCAAGGCCGCATTTATTGC- 10504 ||||| ||| || | || | || ||| || || ||||||| ||||| ||||||| Sbjct 86 GTGGTTGAAACGTTAGATTATGAGGTGCTCTTTGCCGAGCGCAAAGCCGCGCTTATTGCT 145 Query 10505 --GATGTACCCGGAAGACGAGCAGGAAGAGATCGCCCGCACGCTTGAGCTTGAATCGGAG 10562 |||| || | ||| | | ||||| |||||||| || | || | ||||| ||| Sbjct 146 GAGATG---CCAGCAGAACAACGGGAAGCCATCGCCCGTACATTGGAATTAGAATCCGAG 202 Query 10563 CCGATCACCATGCTGCTGGAAGAGAATTGCTATCGCGAATTGCTGTTGCGCCAGCGGGTG 10622 ||| | |||| | || |||||| ||||| || |||||| | | || ||||| | Sbjct 203 CCGTTAACCAAATTATTGCAAGAGAGCTGCTACCGTGAATTGATACTACGTCAGCGCATC 262 Query 10623 AATGAAGCGGCCCGCGC 10639 ||||||||||| ||||| Sbjct 263 AATGAAGCGGCTCGCGC 279 >seq3741 Length=5774 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 2159 ATCGCCAGTCCAGAAAGGATAGGCTTCATGTTCTTCACTGGAAGGCGTCGAAAAGTAGGT 2218 ||| || ||||| || ||||||||| || |||||||| || ||||| ||||||||||| Sbjct 5643 ATCCCCCGTCCAAAATTCATAGGCTTCGTGATCTTCACTCGATGGCGTGGAAAAGTAGGT 5702 Query 2219 GCGGCGCAGTCCTTTTTGTGTCGCCATGCCTGCGGCCACT 2258 ||||| | ||| ||||||| ||||| ||| || ||| Sbjct 5703 ACGGCGTAATCCCGTTTGTGTGGCCATCGCTGAAGCGACT 5742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107065016230932