Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq3187 147 2e-30 seq27670 107 2e-18 >seq3187 Length=10884 Score = 147 bits (162), Expect = 2e-30 Identities = 154/199 (77%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 42101 GGTGAAG--TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAA 42158 ||||||| ||| ||| | || ||| ||||| |||| || || ||||| ||||| || | Sbjct 7727 GGTGAAGCTTTCCACACA-GGCTGT-ATTCCGTTCTACAAGCACTTCCAGACTGCGGTTA 7670 Query 42159 AATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGC 42218 ||||||| |||||||||||| | ||||||||||||||||| | ||| || || |||| Sbjct 7669 AATCTTGCTCTCAAGGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGC 7610 Query 42219 ACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTA 42278 || | ||||| || | ||| ||||| |||||||| ||| || || || | ||||| Sbjct 7609 ACCTTGAAGTTGAAAGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAG 7550 Query 42279 TTCGACATATGGACTACGG 42297 |||| |||||||||||||| Sbjct 7549 TTCGCCATATGGACTACGG 7531 >seq27670 Length=3875 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 123180 CCAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCT 123239 ||||| |||||||| |||||||| ||||||||||| ||||||||||| || |||||||| Sbjct 1576 CCAGAGAAATATCCACAGCTGACTATCCGTGTATCAGGTTATGCAGTGCGTTTTAACTCA 1517 Query 123240 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTAC 123283 |||||| ||||| |||| |||||||| |||| || || || Sbjct 1516 CTGACTAAAGAACAACAGCAAGACGTTATTACTCGTACTTTCAC 1473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539715354706160