Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq12086 123 1e-23 >seq12086 Length=38917 Score = 123 bits (136), Expect = 1e-23 Identities = 185/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 19345 AAAGTAAAATCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATG 19404 ||||| || || || || ||||||||||| ||||| || |||||||| | | |||||| Sbjct 9909 AAAGTTAAGTCTCGCCCTCAGTGTTGTGAAGATGATGCTATGATTATTTCTAGCTGTATG 9968 Query 19405 GCTCGCCTTAACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTG 19464 || | || ||| |||| || |||||||||| || ||||||| || || || Sbjct 9969 GCGAAATTAAATCAGAAAGACAGTGAAATGCATGACTTACTTTTTGATTACTATGTTTTT 10028 Query 19465 GGGGAGACATTCATGGCGCTGGC--ACG-TAAGCATGGATGCTCTGATGGAACTATCGGT 19521 || | || || ||| || || | | || |||| || || |||||| ||| ||| Sbjct 10029 GGCAAAACGTTTATGCAACTCGCTTATGATAGGCAT---TGTTCAGATGGACATATAGGT 10085 Query 19522 AAAAAATTACAGAAAGCGGAGGGTGTGGTTGAAGGGATGTTAATGTTACTTGGTGTCAGA 19581 |||||| |||||||||||||||| | |||| || ||||| ||| | || | | || | Sbjct 10086 AAAAAACTACAGAAAGCGGAGGGGCAGATTGACGGAATGTTGATGATGCTCGATATCTCA 10145 Query 19582 CTGGAAATGGACCGATATGT 19601 || |||||||| |||||| Sbjct 10146 CTTGAAATGGATAAATATGT 10165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194601726642204