Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3053 136 3e-27 >seq3053 Length=25279 Score = 136 bits (150), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || |||||||||||||| || || ||||| | || || || | Sbjct 9960 AAAATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAACCT 10019 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | ||| | || ||| |||||||| || | || ||||| Sbjct 10020 TCGGACACAATCGAGAATGTGAAAGC-CAAGATTCAGGACAAAGAGGGAATTCCTCCAGA 10078 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| ||| |||| ||||| || || ||| | ||||| | ||| || || |||||| Sbjct 10079 TCAACAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACATTGTCCGATTA 10138 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| ||||| ||||| ||||||||| | ||| Sbjct 10139 TAACATTCAAAAGGAGTCAACATTACATCTGGTT 10172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337872972928328