Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq27971 156 1e-33 seq23044 141 2e-29 >seq27971 Length=2576 Score = 156 bits (172), Expect = 1e-33 Identities = 219/306 (72%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 26887 CCGAAGCAGCGCCTGTTCATTCGCGACCTGATCGCTCCGGGGCGCACCACT---TCGCCG 26943 || ||||| |||||||| || || || || || |||||||| || ||| || || Sbjct 997 CCAAAGCAACGCCTGTTTATCCGTGAGCTTATTGCTCCGGG---CAAGACTCAATCACCC 941 Query 26944 GCGATCTTCTGGGTTCAACAGACCGGCTTCACCAACGCCGCCGCAGTCGTGCCGGAGAAC 27003 || || |||||||| || || || ||||| || || || || || ||||| || ||| Sbjct 940 GCAATTTTCTGGGTGCAGCAAACTGGCTTTACTAATAATGCGGCTGTTGTGCCTGAAAAC 881 Query 27004 ACCGCGAAGCCGTACAGCAGCATCACGTTCGGCACCAAGATCACCCCGGTGACCACCATC 27063 || || || || ||||| || | || | | || || ||| | || || ||||| Sbjct 880 ACAGCTAAACCATACAGTGATATTAAATTTGAGCCAAAAATTACCGCAGTAACTACCATT 821 Query 27064 GCGCACATGTTCAAGGCGTCCAAGCAGATCCTTGATGACTTCGCTCAACTGCAGTCGACC 27123 || || |||| || || || ||||| || || |||||||| ||||| ||||||| Sbjct 820 GCACATTTGTTTAAAGCATCTAAGCAAATTCTGGATGACTTTTCTCAATTGCAGTCACTT 761 Query 27124 GTGGACACCGAGATGCGCTTCGGCCTGAAGTATGTCGAAGAGCAGGAGATCCTGTTCGGC 27183 ||||| | || ||||||| ||| |||||| ||| ||||||||||| ||| ||||||| Sbjct 760 GTGGATGCAGAAATGCGCTACGGATTGAAGTTTGTGGAAGAGCAGGAAATCTTGTTCGGT 701 Query 27184 GATGGC 27189 |||||| Sbjct 700 GATGGC 695 >seq23044 Length=7840 Score = 141 bits (156), Expect = 2e-29 Identities = 227/326 (70%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 27265 GGTATCGATGACCTGCGCCTGGCGATGCTGCAGGCCCAGCTGGCGCGCCTGCCGGCATCC 27324 ||||| ||||||||||| || || ||||| ||||| ||| |||| | | || || || Sbjct 6048 GGTATTGATGACCTGCGTCTCGCCATGCTTCAGGCTCAGTTGGCACTTTTCCCTGCGTCA 6107 Query 27325 GGCCACGTTCTGCACTTCATCGACTGGGCGAAGATCGAGCTGACCAAGGACACCCTGGGC 27384 || || ||| ||||||| || || ||||||||||| ||||| | || ||| |||| Sbjct 6108 GGACATGTTTTGCACTTTATTGATTGGGCGAAGATTGAGCTAGCAAAAGACGAATTGGGT 6167 Query 27385 CGCTACATCCTCGCCAACCCGCTGGGCCTGGCCGGCCCGCTGCTGTGGGGCCTGCCGGTG 27444 || |||||| | || ||||| ||| || || || || ||||| | || || Sbjct 6168 CGTTACATCTTAGCTAACCCATCGGGTTTGTTAGGTCCTACACTTTGGGGTTTACCAGTT 6227 Query 27445 GTTGCCACTGAAATCGCCGCGTTCCAGGGCAAGTTCCTGACTGGTGCGTTCCAGACCGGC 27504 || | ||| | ||| || ||| | || ||||| | || || || ||| | | || Sbjct 6228 GTAGAAACTCAGGCCGCTGCTTTCAAAGGTAAGTTTTTAACCGGGGCATTCAATGCAGGG 6287 Query 27505 GCGCAGATCTTCGATCGCGAAGACGCCAACGTGGTGATCTCCACCGAGAACGCCGACGAC 27564 || ||| | || || || || || | |||||||| || || || ||||| | || ||| Sbjct 6288 GCTCAGTTATTTGACCGTGAGGAAACTAACGTGGTCATTTCTACTGAGAATACTGATGAC 6347 Query 27565 TTCGAGAAGAACATGATCTCGATCCG 27590 |||||||| |||||||| || || || Sbjct 6348 TTCGAGAAAAACATGATTTCCATTCG 6373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133812877535436