Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq27670 145 8e-30 seq10189 104 2e-17 seq3187 86.0 7e-12 seq29176 82.4 8e-11 >seq27670 Length=3875 Score = 145 bits (160), Expect = 8e-30 Identities = 119/145 (82%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52720 GTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCGAACA 52779 || || ||||||| ||| || || ||||||||||||| ||||| |||||||| || || Sbjct 1473 GTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCACT 1532 Query 52780 GCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGCTTCA 52839 |||||||| || ||||||||||||| |||||| ||||| |||| |||||||||||| Sbjct 1533 GCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTCT 1592 Query 52840 AGCAACATTTCACGATTCATTACGT 52864 | || ||||||||| ||||| |||| Sbjct 1593 AACAGCATTTCACGGTTCATAACGT 1617 >seq10189 Length=12531 Score = 104 bits (114), Expect = 2e-17 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 66418 GATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAAGAGT 66477 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1 GATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCTAAGGGC 60 Query 66478 GCATT 66482 ||||| Sbjct 61 GCATT 65 >seq3187 Length=10884 Score = 86.0 bits (94), Expect = 7e-12 Identities = 161/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 139557 ATGCATCATACATACCTTCAACTTCATGCGGACTGAATAATGTGATATAGTCGTTTTTAA 139616 |||||||||||| |||| || || || ||||||| ||||| | | ||| |||| Sbjct 7439 ATGCATCATACAGACCTGGGACATCTGAAGGGCTGAATAGGGTGATGTCTTGGTTCTTAA 7498 Query 139617 TATAACGTTCGATCATTAAGTCATTAATCTGGACACCATAATCTAAATGACGAATACGGT 139676 | |||||||| | || || ||||| || || | ||| |||| |||| Sbjct 7499 TCAAACGTTCGT--ANNNNNNNNNNNAT-TGCACACCGTAGTCCATATGGCGAACTCGGT 7555 Query 139677 TTTCATCGATACCTTTATTATTCTTCAGTACGATTAATTTTTCATATTCCAGATGCCACA 139736 | | || | || || || ||||| || | | ||||| ||| || ||||| | Sbjct 7556 TACCTTCAACCCCGCGGTTGTTTTTCAGGACTAACAGGCTTTCAACTTCAAGGTGCCAAA 7615 Query 139737 TCGGATAATATAATGTCGCCGCACCACCACGTACACCACCTTGTGAACATGATTTCAC 139794 | || ||| |||| || || ||||||||||| ||||||||||| || || ||||| || Sbjct 7616 TTGGGTAAAATAAGGTAGCAGCACCACCACGGACACCACCTTGAGAGCAAGATTTAAC 7673 >seq29176 Length=3337 Score = 82.4 bits (90), Expect = 8e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTT 66453 ||||| || ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1494 AATGGTACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGGCGTT 1546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521898744090960