Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15048 724 0.0 seq7146 152 7e-32 >seq15048 Length=4365 Score = 724 bits (802), Expect = 0.0 Identities = 1304/1891 (69%), Gaps = 21/1891 (1%) Strand=Plus/Plus Query 76761 TTTATT-TTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAG 76819 |||||| ||| | || || | || || ||||| | | | ||| ||||| || | || Sbjct 1270 TTTATTGTTACTTTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAG 1329 Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTT 76879 || ||||| |||||||||||||| |||| | ||||||| || ||| | || Sbjct 1330 GTAATACATTCCAGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTT 1389 Query 76880 GGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 76939 |||| | || || | | ||||||||| | ||||| ||||||||||| || ||||| Sbjct 1390 CCCATAATTTGGCTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCC 1449 Query 76940 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTTCCCAAATAGTTTTGAAA 76997 ||||||||| |||||| || || | ||| | || |||||||||| ||||||| || Sbjct 1450 TCTATCAGCAGCCATTAAAAT--TGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAA 1507 Query 76998 ACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATA 77054 | | || | | ||| | || |||||||||||||||||| ||||| Sbjct 1508 AGATCCCGTATGTTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATT 1567 Query 77055 ATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGA 77114 ||| || || || | |||| |||||| | || |||| | |||| || | ||| Sbjct 1568 ATTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGA 1627 Query 77115 GGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATAT 77174 | ||||| | ||||||||| || |||||||||| || ||||||||||| ||||| Sbjct 1628 TGGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATAC 1687 Query 77175 GGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCC 77234 ||||| | |||||| || ||||||||||| || || || || || |||||||| |||||| Sbjct 1688 GGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCC 1747 Query 77235 ACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCC 77294 || | || | || || | ||||| | | | ||||||| ||||| || |||||||| Sbjct 1748 ACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCC 1807 Query 77295 CAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATAT 77354 || | || || ||| || |||| | ||| || || || ||||| || || | Sbjct 1808 CACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGA 1867 Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 ||| | |||||||||||| ||||| | |||| || || |||||||| || |||||| Sbjct 1868 CTTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAAT 1927 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 || || ||||||||||||| || || | |||||| | | || | ||| ||| Sbjct 1928 GCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCA 1987 Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 | || || | | |||||| || || || | || ||||| ||||||||||||||| Sbjct 1988 TAAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGT 2047 Query 77535 CTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATT 77594 ||||||| | ||| || |||| ||||| || | ||||||||||| | || || ||| Sbjct 2048 CTATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATT 2107 Query 77595 TTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTT 77654 ||||| | ||| | |||| ||| || || |||| ||| ||| ||||| | Sbjct 2108 TTATTTAAATTCTTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACT 2167 Query 77655 CCATC---TATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCA 77711 ||| | | |||||||| || ||||| || || || || || ||||| |||| |||| Sbjct 2168 TTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCA 2227 Query 77712 TTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771 | | | ||||| | || || |||||||||||||| ||||| ||||| || || Sbjct 2228 TCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGG 2287 Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831 |||||||||||||| ||| |||||||||| || || || || ||| | || || || ||| Sbjct 2288 TTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTT 2347 Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACG-ACTCTAGCTTTTA-TCATAGATTTGT 77889 || | |||| || ||||| | ||| | | ||| ||||||| | | ||| | Sbjct 2348 TCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGG-GCTTTTACTTTTCTATTCG- 2405 Query 77890 ATCGCCTCTCTCTTTC--ATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATC 77947 ||| || ||||||| ||||| ||| | |||||||| |||||||| || Sbjct 2406 --CGCGTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTC 2463 Query 77948 ATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCG 78007 || ||| ||||| || | | |||||||| | ||||| || | | | | |||||| Sbjct 2464 ATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCG 2523 Query 78008 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| || ||||| | |||| ||||| ||| || | |||||||||||| Sbjct 2524 TTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCTTC 2583 Query 78068 ATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 78127 || || || || || || | ||| | |||||| | ||||||||| ||||| || |||| Sbjct 2584 CTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAA 2643 Query 78128 ATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTT 78187 || ||||| | | ||||||| | ||| ||||| || || | || | ||| || Sbjct 2644 GTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATT 2703 Query 78188 ATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 || ||||||| | |||||| | | |||||||| |||||||| ||||| || ||| | Sbjct 2704 GTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATAGA 2763 Query 78248 ACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATAT 78307 | || | || || || | || ||| || || ||||| || |||||||| Sbjct 2764 TGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGATAT 2823 Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAG 78367 | |||||| ||| | || | | ||||| || || || | | ||| |||| Sbjct 2824 CATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTAAG 2883 Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 || || || || | ||| | ||| ||| | ||| ||| | |||||| ||||| Sbjct 2884 TAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGATGC 2943 Query 78428 ATGCGTAAACCATTTTTCAGAAAG-TAGATTGTATGTTTCAATAGCTGATTCTATGTCCC 78486 ||||||||| || |||| || || ||| ||||| |||||||| || || ||||| || Sbjct 2944 ATGCGTAAAAAATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATATCAT 3002 Query 78487 ATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTAT 78546 |||||| |||| | || | ||||||||| ||||||||||||||| | | || Sbjct 3003 CACCATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTTGC 3062 Query 78547 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 78606 || |||||||| || || || ||| | |||||||| |||||||| ||||| || Sbjct 3063 CGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCCAA 3122 Query 78607 AGTCTCTCTCGTAAATAATAACAGAATTTAG 78637 | || | || || || ||| | || || || Sbjct 3123 AATCACGATCATATATGATAGCTGAGTTCAG 3153 >seq7146 Length=6253 Score = 152 bits (168), Expect = 7e-32 Identities = 385/580 (66%), Gaps = 13/580 (2%) Strand=Plus/Minus Query 47976 TCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 48035 || || |||||||| || || ||||| || || ||||| || || | || || Sbjct 5920 TCGGCCACGAATTCGATGTACTCGGACATCAGTTTGCAGTTCATGCCGATCAAATTGACC 5861 Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC--GATG 48093 || || || || || || ||||| |||||||| | || || || | || ||| |||| Sbjct 5860 GGCAGCGCTTCGGTGAGGAACTCCTGTTCGATCTTCACCGCTTCGTCGATGATCTCGATG 5801 Query 48094 TTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCAC 48153 | | ||| || || | | || || ||| | ||||| | || || ||||||| Sbjct 5800 ATGCG--TTCGCGGCTGGGACGCTGCACCAGATGCTGGAACATCAGGCAGGCGAAATCAC 5743 Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213 |||| || || || || | || || ||||| || || ||||| |||||||| || | Sbjct 5742 AATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGGTGAGGCCGGGCATGAGGC 5683 Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273 | || || || ||||| || || | |||||| || || ||||| ||||| || |||| Sbjct 5682 CGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCCGAGAAGAAAATGCCCTCGACGG 5623 Query 48274 CCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG----CTTCGTTGTGTATCCA--CCGTT 48327 | || || || | | | ||| ||| | ||| ||||| | | ||||| || | Sbjct 5622 CGGCGAACGCAATGATGCGCTCACCGAAGTTGGCCGACTTCGAGGAG-ATCCATGCCAT- 5565 Query 48328 GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 48387 ||||| || ||||||||||| || |||| |||||| | ||||| || || |||| Sbjct 5564 -CGCCCAGTCGGCCTTCTTCTTGACCGCCGGCAATGTTTCGACCGCATTGAACAGGAAGT 5506 Query 48388 ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 | || ||| | | ||| || || || | || || ||||| || ||||| | Sbjct 5505 CCCGCTGATGCGGATCCCTGATGTAGGTGTCAATCAGAATGCTGTACATCTCCGAGTGGA 5446 Query 48448 TATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCG 48507 ||| || || || ||||| || ||||| || || | ||| ||||| | || ||||| Sbjct 5445 CATTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCTGTCACTTGCACCTCTT 5386 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATC 48547 | || || || ||| |||||| || || || ||||| Sbjct 5385 GGCTGAAACGCTCCACCAGATTCTCGTTGACAATGCCATC 5346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694380807682240