Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15048 697 0.0 seq7146 143 4e-29 >seq15048 Length=4365 Score = 697 bits (772), Expect = 0.0 Identities = 1372/2009 (68%), Gaps = 30/2009 (1%) Strand=Plus/Plus Query 75356 TTTATT-TTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAG 75414 |||||| ||| | || || | |||||| ||||||| | | ||||||||| || | || Sbjct 1270 TTTATTGTTACTTTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAG 1329 Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTT 75474 || ||||| |||||||||||||| |||| | ||||||| || ||||| || Sbjct 1330 GTAATACATTCCAGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTT 1389 Query 75475 GGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCC 75534 |||| | || || | | ||||||||| | ||||| ||||||||||| || ||||| Sbjct 1390 CCCATAATTTGGCTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCC 1449 Query 75535 TCTATCAGCCGCCATTTTTATAATGGTCTTTTGAG-GA-ATTTCCCAAATAGTTTTGAAA 75592 ||||||||| |||||| || || | ||| | || |||||||||| ||||||| || Sbjct 1450 TCTATCAGCAGCCATTAAAAT--TGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAA 1507 Query 75593 ACTTGTTTGATATCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATA 75649 | | || | | ||| | | || ||||||||||||| || | |||||| Sbjct 1508 AGATCCCGTATGTTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATT 1567 Query 75650 ATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGA 75709 ||| || || || | |||| |||||| | | ||||||| | |||| || | ||| Sbjct 1568 ATTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGA 1627 Query 75710 GGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATAT 75769 | ||||| | ||||||||| || |||||||||| || ||||||||||| ||||| Sbjct 1628 TGGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATAC 1687 Query 75770 GGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCC 75829 ||||| | |||||| || ||||||||||| || || || || || || ||||| |||||| Sbjct 1688 GGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCC 1747 Query 75830 ACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCC 75889 || | || | || || | ||||| | | | ||||||| ||||| || |||||||| Sbjct 1748 ACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCC 1807 Query 75890 CAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATAT 75949 || | || || || || |||| | ||| || || || ||||| ||||| | Sbjct 1808 CACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGA 1867 Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 ||| | ||||||||| || | || ||||| || || || ||||| ||||| || Sbjct 1868 CTTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAAT 1927 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || ||||||||||||| || || | |||||| | | ||| | ||| ||| Sbjct 1928 GCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCA 1987 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||| || | | |||||| || || || || || ||||| ||||||||||||||| Sbjct 1988 TAAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGT 2047 Query 76130 CTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATT 76189 ||||||| | ||| || ||| ||||| || | || |||||||| | ||| || ||| Sbjct 2048 CTATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATT 2107 Query 76190 TTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA---T 76246 ||||| | ||| || |||| ||| || || |||| ||| ||| ||||| | Sbjct 2108 TTATTTAAATTCTTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACT 2167 Query 76247 TTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCA 76306 || | || ||||||||||||| | ||| || || || || || |||||||||| |||| Sbjct 2168 TTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCA 2227 Query 76307 TTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGA 76366 | | | ||||| | || || || ||||||||||| || || ||||| || || Sbjct 2228 TCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGG 2287 Query 76367 TTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTT 76426 |||||||||||||| ||| | || ||||| || || || || | | | || || || ||| Sbjct 2288 TTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTT 2347 Query 76427 TCAATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTA-TTATAGATTTGT 76484 || | |||| || ||||| | ||| | |||| ||||||| || | ||| | Sbjct 2348 TCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACT-GGGCTTTTACTTTTCTATTCG- 2405 Query 76485 ATCGCTTCTCTCTT--TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATC 76542 ||| || ||||| ||||||| | ||| || |||||||| |||||||| || Sbjct 2406 --CGCGTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTC 2463 Query 76543 ATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCG 76602 || ||| |||||||| | | || ||||| | ||||| || | | | | ||| || Sbjct 2464 ATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCG 2523 Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| || ||||| | |||| ||||| ||| || | |||| ||||||| Sbjct 2524 TTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCTTC 2583 Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722 || || || || || || | ||| | ||||| | ||||||||| ||||| || |||| Sbjct 2584 CTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAA 2643 Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782 || || || | | | || || | ||| ||||| || || | || | ||| || Sbjct 2644 GTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATT 2703 Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 || ||||||| | |||||| | | ||||||||| || ||||| ||||| || ||| | Sbjct 2704 GTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATAGA 2763 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 | || || || || | || | || || || ||||| || |||||| || Sbjct 2764 TGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGATAT 2823 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 | ||| || ||| | || | | | || || || || ||| | | ||| |||| Sbjct 2824 CATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTAAG 2883 Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 || || || || | ||| | ||| ||| | ||| ||| | ||| || ||||| Sbjct 2884 TAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGATGC 2943 Query 77023 ATGAGTGAACCATTTTTCAGAAAG-TAGATTGTATGTTTCAATAACTGCTTCTATATCCC 77081 ||| || || || |||| || || ||| ||||| |||||||| | | |||||||| Sbjct 2944 ATGCGTAAAAAATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATATCAT 3002 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT 77141 |||||| |||| || || | ||||||||| |||||||||| ||| | | || Sbjct 3003 CACCATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTTGC 3062 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 77201 || |||||||| || || || ||| | |||||||| |||||||| ||||| || Sbjct 3063 CGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCCAA 3122 Query 77202 AGTCTCTTTCGTAAATAATAACCGAATTTAG----TTTGTCCTTATATTTGGTAACAATA 77257 | || | || || || ||| | || || || | || | | || |||| || | || Sbjct 3123 AATCACGATCATATATGATAGCTGAGTTCAGACGATCTG-CGTGATGTTTGACAATATTA 3181 Query 77258 TCCATGACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTA 77317 | ||| ||| | || || |||||||| | ||||| ||| ||| |||| || Sbjct 3182 T-AATGGAAGTCG--GATATCATTGGAGACAGAGTTCCAGTTTCCACATTCACATTAGTA 3238 Query 77318 AATAAGTCTTCCATTACGTCGCTAAATAG 77346 | ||||| | || ||||| ||||||| Sbjct 3239 TACAAGTCGTGTATGACGTC-TTAAATAG 3266 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400 |||| |||||| ||||| ||||||| ||| || || || || | ||| |||| ||| || Sbjct 3416 AAATGCTTTTTTAGTTTCTTTGTGTAAATTGGAAACTGCAATACGAGCCGCTAAAATAGC 3475 Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTC 77460 ||||| | ||| | ||| || | || || |||||||| |||||| |||||||||| Sbjct 3476 GTAGTCTGCATGATTTGTTGTTAGGCCTGCAGCGATTTCTGCGGCTAAATTATCTAATTC 3535 Query 77461 TATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTT 77499 | ||| ||||| || ||| || || | || ||||| Sbjct 3536 TTGAGTTGTAACGCCAGAATAGAGACCATTTATTACTTT 3574 >seq7146 Length=6253 Score = 143 bits (158), Expect = 4e-29 Identities = 383/579 (66%), Gaps = 11/579 (2%) Strand=Plus/Minus Query 46465 TCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACC 46524 || || |||||||| || ||| ||||| || || ||||| || || | |||||| Sbjct 5920 TCGGCCACGAATTCGATGTACTCGGACATCAGTTTGCAGTTCATGCCGATCAAATTGACC 5861 Query 46525 GGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC--CGATATTATCGATG 46582 || || || || || || ||||| ||||| || | || || || |||| | |||||| Sbjct 5860 GGCAGCGCTTCGGTGAGGAACTCCTGTTCGATCTTCACCGCTTCGTCGATGATCTCGATG 5801 Query 46583 TTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCAC 46642 | | ||| || || | |||| || ||| | ||||| | || || ||||||| Sbjct 5800 ATGCG--TTCGCGGCTGGGACGCTGCACCAGATGCTGGAACATCAGGCAGGCGAAATCAC 5743 Query 46643 AATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTC 46702 |||| ||||| || || | || || ||||| || || ||||| || ||||| || | Sbjct 5742 AATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGGTGAGGCCGGGCATGAGGC 5683 Query 46703 CACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAG 46762 | ||||| || ||||| || || | |||||| || || ||||| ||||| || || | Sbjct 5682 CGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCCGAGAAGAAAATGCCCTCGACGG 5623 Query 46763 CCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--ATGA-ATCCA--CCTTTG 46817 | ||||| || | | | ||| ||| | |||| || | || ||||| || | Sbjct 5622 CGGCGAACGCAATGATGCGCTCACCGAAGTTGGCCGACTTCGAGGAGATCCATGCCAT-- 5565 Query 46818 AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 46877 ||||| || ||||| ||||| || |||| |||||| | ||||| || || |||| Sbjct 5564 CGCCCAGTCGGCCTTCTTCTTGACCGCCGGCAATGTTTCGACCGCATTGAACAGGAAGTC 5505 Query 46878 tttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAAT 46937 | || ||| | | || || || || | || || ||||| || || || | Sbjct 5504 CCGCTGATGCGGATCCCTGATGTAGGTGTCAATCAGAATGCTGTACATCTCCGAGTGGAC 5445 Query 46938 GTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGT 46997 || || || || ||||| || ||||| || || | || || || | || |||||| Sbjct 5444 ATTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCTGTCACTTGCACCTCTTG 5385 Query 46998 ACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATC 47036 | || || || || |||||| || || || ||||| Sbjct 5384 GCTGAAACGCTCCACCAGATTCTCGTTGACAATGCCATC 5346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712638835221120