Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq27670 111 2e-19 seq16859 82.4 8e-11 >seq27670 Length=3875 Score = 111 bits (122), Expect = 2e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 62605 CCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 62664 || || |||||||| |||||||| ||||||||||| ||||||||||| || |||||||| Sbjct 1576 CCAGAGAAATATCCACAGCTGACTATCCGTGTATCAGGTTATGCAGTGCGTTTTAACTCA 1517 Query 62665 CTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCAC 62708 |||||| ||||| |||| |||||||| ||||||| ||||| Sbjct 1516 CTGACTAAAGAACAACAGCAAGACGTTATTACTCGTACTTTCAC 1473 >seq16859 Length=8331 Score = 82.4 bits (90), Expect = 8e-11 Identities = 152/218 (70%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 65986 GCACAAAAAGATATTCATTGCGTATTTGTAGATGAAGCTCAGTTTTTAA--AAACTGAAC 66043 |||||||||| | ||||| || || | ||||| ||| ||||||| |||| ||| Sbjct 5864 GCACAAAAAG---TACATTGTGTTCTTATTGATGAGTGTCAATTTTTAACTAAAC--AAC 5918 Query 66044 AAGTGCATCAATTGAGTCGA-ATTGTTGATACATATAATGTTCCTGTTATGGCTTATGGA 66102 |||| | ||||| | ||| |||||||||| | || | |||||| | |||||| Sbjct 5919 AAGTAGAGCAATTATG-CGATATTGTTGATAACAGTGATATCCCTGTTTTATGTTATGGC 5977 Query 66103 TTAAGGACTGATTTCGCTGGAAAATTATTTGAAGGTTCTAAAGAACTTTTGGCGATTGCA 66162 ||||| || || || || || | ||||||||||| | || | | | ||| || Sbjct 5978 TTAAGAACAGACTTTGCAGGGCAGTTATTTGAAGGGAGTCAATATTTACTTGCGTGGGCT 6037 Query 66163 GATAAACTTATTGAACTAAAAGCAGTTTGTCATTGTGG 66200 ||||| ||| |||| || ||| | |||||| | ||||| Sbjct 6038 GATAAGCTTGTTGAGCTTAAAACCGTTTGTTACTGTGG 6075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546109502752800