Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq3187 122 9e-23 seq27670 91.5 2e-13 >seq3187 Length=10884 Score = 122 bits (134), Expect = 9e-23 Identities = 170/240 (71%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 141201 GGACTAAACAGAGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 141260 || || || || ||||||| | ||||||||||||||||| | || Sbjct 7468 GGGCTGAATAGGGTGATGTCTTGGTTCTTAATCAAACGTTCGT--ANNNNNNNNNNNAT- 7524 Query 141261 TGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 141320 || || || || || | ||| |||| ||||| | || || || |||||| || || Sbjct 7525 TGCACACCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAGG 7584 Query 141321 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 141380 || | ||| |||||||||| | |||||| ||||| || | | || || || |||||| Sbjct 7585 ACTAACAGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACCA 7644 Query 141381 CGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAGAAAGGAATA 141440 ||||| |||||||| ||||| |||||||| || || |||||||| || |||| |||||| Sbjct 7645 CGGACACCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTGCTTGTAGAACGGAATA 7704 >seq27670 Length=3875 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 60002 TGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGCAC 60061 |||||||||||| | |||||||| |||| |||||| ||||| |||||||| ||||| Sbjct 1472 TGTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCAC 1531 Query 60062 CGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCGTC 60121 || || || || ||||| || || ||||| || ||||| || || | || | ||| || Sbjct 1532 TGCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGGGTTTTCCATCGCTTC 1591 Query 60122 CAGCAGAGTTTCGCG 60136 | ||| |||| || Sbjct 1592 TAACAGCATTTCACG 1606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538119216699520