Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq3187 143 3e-29 seq27670 107 2e-18 >seq3187 Length=10884 Score = 143 bits (158), Expect = 3e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 61947 TATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCG 62006 |||||| |||| || || ||||| ||||| || |||||||| |||||||||||| | || Sbjct 7704 TATTCCGTTCTACAAGCACTTCCAGACTGCGGTTAAATCTTGCTCTCAAGGTGGTGTCCG 7645 Query 62007 TGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGT 62066 ||||||||||||||| | ||| || || |||||| | ||||| || | ||| ||||| Sbjct 7644 TGGTGGTGCTGCTACCTTATTTTACCCAATTTGGCACCTTGAAGTTGAAAGCCTGTTAGT 7585 Query 62067 TCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGACTACGG 62120 |||||||| ||| || || || | ||||| |||| |||||||||||||| Sbjct 7584 CCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAGTTCGCCATATGGACTACGG 7531 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 63750 GATACATGGGTTGCTACATGGACATTCAGTGAAACCATTCACTCTCGTTCATATACTCAT 63809 || || ||||| | |||||| ||||| ||||||||| ||||| |||||||| |||||| Sbjct 5805 GAAACCTGGGTGGAAACATGGGCATTCTCTGAAACCATCCACTCACGTTCATACACTCAT 5746 Query 63810 ATCATGCGAAATCTTTATACTGATCCATCGAAGGTATTTGATGAGATTGTATTAGATGAA 63869 || || || ||| | | ||| || ||| | ||||| || || || | ||||| Sbjct 5745 ATTATCCGTAATATCGTGAATGACCCGGCGATTATTTTTGACGATATCGTTGAAAATGAA 5686 Query 63870 GCAATTATGAAACGTGCGGAATCAATCGGCAAATATTATGATGA 63913 | |||| | ||||||||| || ||| ||||||||||| Sbjct 5685 GAAATTTTAAAACGTGCGAAAGATATCTCTGGTTATTATGATGA 5642 >seq27670 Length=3875 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 142604 CCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCT 142663 ||||| |||||||| ||| |||| ||||||||||| ||||||||||| || |||||||| Sbjct 1576 CCAGAGAAATATCCACAGCTGACTATCCGTGTATCAGGTTATGCAGTGCGTTTTAACTCA 1517 Query 142664 CTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTAC 142707 |||||| ||||| |||| |||||||| ||||||| || || Sbjct 1516 CTGACTAAAGAACAACAGCAAGACGTTATTACTCGTACTTTCAC 1473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542434227062160