Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq3187 131 2e-25 seq27670 95.1 1e-14 >seq3187 Length=10884 Score = 131 bits (144), Expect = 2e-25 Identities = 178/249 (71%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 136606 TATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCCAAGGCGGAGTCCG 136665 |||||| |||| || |||||||| || || ||||| || ||||| ||||| || ||||| Sbjct 7704 TATTCCGTTCTACAAGCACTTCCAGACTGCGGTTAAATCTTGCTCTCAAGGTGGTGTCCG 7645 Query 136666 TGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTGAAAACCTCCTCGT 136725 ||||||||| ||||| | | ||| || || |||||| | |||||||||| ||| | || Sbjct 7644 TGGTGGTGCTGCTACCTTATTTTACCCAATTTGGCACCTTGAAGTTGAAAGCCTGTTAGT 7585 Query 136726 ACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAGATTATGGTGTTCA 136785 || || |||||| || || || | ||||| |||||||| | || || ||||| || Sbjct 7584 CCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAGTTCGCCATATGGACTACGGTGTGCA 7525 Query 136786 GATTAATAACCTGATGATTGAACGTTTGATTAAGAATGATTACATCACTCTGTTTAG--- 136842 || | ||||||||||||||||| | ||||||| || || || Sbjct 7524 -ATNNNNNNNNNNNT--ACGAACGTTTGATTAAGAACCAAGACATCACCCTATTCAGCCC 7468 Query 136843 TCCAGATGT 136851 | ||||||| Sbjct 7467 TTCAGATGT 7459 >seq27670 Length=3875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 47356 GATGCGGTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCG 47415 || ||| | || ||||||| ||||| || ||||||||||| || || || || || || Sbjct 1591 GAAGCGATGGAAAACCCAGAGAAATATCCACAGCTGACTATCCGTGTATCAGGTTATGCA 1532 Query 47416 GTGCGCTTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACA 47475 ||||| || ||||| |||| |||||| |||| |||||||| |||||||||||||| Sbjct 1531 GTGCGTTTTAACTCACTGACTAAAGAACAACAGCAAGACGTTATTACTCGTACTTTCACA 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539673771952480