Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3053 165 2e-35 seq9782 131 4e-25 seq29710 89.7 1e-12 seq25582 89.7 1e-12 seq8890 89.7 1e-12 seq8405 89.7 1e-12 >seq3053 Length=25279 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| ||||||||||| || || ||||| ||||| || || | Sbjct 10190 ACCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGA 10131 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| |||| ||| || || ||||| || | ||||||||| || || Sbjct 10130 CAATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGG 10071 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| ||||| || ||||| ||||| || | ||||| |||||||||| |||||| Sbjct 10070 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGAC 10011 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| ||||| ||||| | || || || || ||||||||||| Sbjct 10010 CTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTT 9960 >seq9782 Length=20874 Score = 131 bits (144), Expect = 4e-25 Identities = 293/437 (67%), Gaps = 6/437 (1%) Strand=Plus/Plus Query 273615 TTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATT 273674 ||||| ||||| |||||||| || ||| | || ||||||| | |||| || || Sbjct 11795 TTCGTGGACCAGCCGGTGCCGATGCCGTCGGCTCCGTTCACCAAGACCATCGGTATGATC 11854 Query 273675 GGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCA 273734 || | || ||| || || ||||| | |||||||| ||| ||| ||| | | Sbjct 11855 GGAATGTACCATTGCGGTTCGATTTTCTGGCCATCGTCCACTTCGTATGTCAGCAAGGGA 11914 Query 273735 TCATCCGTATCAACGAAAACCTTTCGCGTCT--GAGGAT-TCAGTTTCGTGAAAATGTAC 273791 |||||| | ||| | |||||| | ||| |||| |||||||||||| Sbjct 11915 TCATCCAGCGGATGGAAGATGAGGCGCGTCAACGGGGACATCAG---CGTGAAAATGTAA 11971 Query 273792 CTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGT 273851 | ||||| ||| ||||||||| || | ||| | | ||| |||||||| ||| Sbjct 11972 CGAGCACTGGCACTGTCCTTGCCGCCGTTCAGACGAGTACCGAACTGACCGCGCGGCTCC 12031 Query 273852 AGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGA 273911 ||| |||| |||||||| || || || | ||| |||| |||||| || ||| || Sbjct 12032 AGCAAGTTGATGTTGTTCGAGCCCACATAGTTCTGGGCCAAATTCACAATGGTCATTTGC 12091 Query 273912 AGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCA 273971 ||||| ||||||||||| || |||||| |||||| | |||| ||||| || Sbjct 12092 AGGGACACCTCGCCGTGATGGTAGGCGGACATTTCGGCCACCGAACCGGACAACTGGGCC 12151 Query 273972 ACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAG 274031 |||||||| |||| | | ||| |||||||| | ||| |||||| || || Sbjct 12152 ACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCACGTGAACATCACCTTGCGTTGGCCC 12211 Query 274032 GGCTTGAACCCATCAAC 274048 |||||||| || || || Sbjct 12212 GGCTTGAAGCCGTCCAC 12228 >seq29710 Length=1637 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 198 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 254 >seq25582 Length=1440 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 204 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 260 >seq8890 Length=5443 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 885 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 941 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1994 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 2050 >seq8405 Length=2727 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 2171 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 2227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046294399298564