Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 347 1e-90 seq7 150 2e-31 >seq4 Length=10813142 Score = 347 bits (384), Expect = 1e-90 Identities = 737/1096 (67%), Gaps = 16/1096 (1%) Strand=Plus/Minus Query 52802 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 52861 ||||| || |||||||||||| | | ||| || || || || ||||| ||||| |||||| Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTT 9996600 Query 52862 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCT 52921 ||||| || | |||| ||||| ||||||||| ||| || || | || | || || Sbjct 9996599 TTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCA 9996540 Query 52922 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 52981 || || ||||| || | || || |||||||| ||||| || || | ||||| ||||| Sbjct 9996539 GCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATC 9996480 Query 52982 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 53041 | | |||| ||| || | ||| ||||||| || ||||| | ||| || || || Sbjct 9996479 TGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCC 9996420 Query 53042 GGAAG---GTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCA 53098 || | || | | || || || || || | | || || | || || || ||| Sbjct 9996419 GGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTCA 9996360 Query 53099 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 53158 | ||| || |||||| | | | || || || || | || || ||||| || Sbjct 9996359 CTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAAC 9996300 Query 53159 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 53218 ||||| || | ||| || |||||||| ||||| |||| || || || | || ||||| Sbjct 9996299 TCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTG 9996240 Query 53219 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 53278 ||||| | || || ||||| || || || ||||||||||| | | | | ||||| Sbjct 9996239 TTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTC 9996180 Query 53279 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 53336 | ||| |||| | | ||||| | |||||||| |||||| ||| | | | || Sbjct 9996179 ACACC--ATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAG 9996122 Query 53337 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTA 53395 || || |||||||| ||||| | | || ||||| |||| || Sbjct 9996121 TCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGAC-ATCCTTCATACGTC 9996063 Query 53396 TCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATG 53455 |||||||| || ||||| || || |||||||| ||||| ||||| ||||| |||||| Sbjct 9996062 TCGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATG 9996003 Query 53456 GTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG 53515 ||||| || || | ||| | | ||| || || || || ||| | Sbjct 9996002 GTTTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATT 9995943 Query 53516 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 53575 || || || || || || | ||||| | || || || || |||| || ||| | || Sbjct 9995942 AGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTG 9995883 Query 53576 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635 |||| || ||||| | || ||||| ||||| |||||| || || || || || || Sbjct 9995882 GAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTC 9995823 Query 53636 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTAC 53691 | || |||| || | ||| || |||| |||||| | ||||||| | | || Sbjct 9995822 GTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAAT-TAAC 9995764 Query 53692 AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC-AT 53750 ||||||||| | ||||| || |||| ||||| || || | ||||| || | || || Sbjct 9995763 AAACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGG-TGAGCTAT 9995705 Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810 ||| | ||||| ||||| ||||| ||||||||||| ||||| | ||| || || || Sbjct 9995704 ATTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGG 9995645 Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870 ||| ||||||| |||||||||||||| ||| | || || || ||||| | |||||| | Sbjct 9995644 ACTTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACT 9995585 Query 53871 CTATAATCGCTTTCCA 53886 | || || || | ||| Sbjct 9995584 CRATGATAGCGTGCCA 9995569 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 |||| | |||||| || ||||||||||| || || ||| |||||||||| | | Sbjct 9986452 ACTCTCTCCATAAATAGGTCAGGAATCCACAGGGCATAAAACAGATCTCTGGCGCGGACT 9986393 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| || ||||| || ||||| || || |||||| | | | ||||| |||||| || Sbjct 9986392 TCCTCCTTGCCTGTGTTTTTTTTCAGGTCCAGGAACTCAAACACATCAGCATGCCATGGC 9986333 Query 54149 TCCAAGTATAT 54159 |||| ||| || Sbjct 9986332 TCCAGGTAAAT 9986322 >seq7 Length=109384913 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24392 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 24451 ||| || || |||||||||||||| | |||||||||||||| ||||||||||| || || Sbjct 105116689 ACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGAT 105116748 Query 24452 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCG 24511 ||| |||||||| || || || || || || ||||| | || |||||| || |||| Sbjct 105116749 GGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCT 105116808 Query 24512 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 24571 ||| | | |||||||| || || || ||| || ||||| || || | |||||||| Sbjct 105116809 TTCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTT 105116868 Query 24572 TATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609 || |||||| | || ||||| | |||| ||||||| Sbjct 105116869 GATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCAAT 105116906 Score = 104 bits (114), Expect = 3e-17 Identities = 92/114 (81%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675 || |||| |||| || |||||||| | ||||||||||| ||||| ||||||||||||| Sbjct 105117149 TACCTTT-GATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACA 105117207 Query 24676 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 | | ||| |||||||| |||| ||| || || | |||||| | |||||||||| Sbjct 105117208 TTTGCCAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTTT 105117261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593627079521280