Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 >seq2 Length=39772498 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | || |||| ||| | ||| || || || || ||||| ||||| Sbjct 4313301 GTTACCACCACGAAGGCGAAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTC 4313242 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | || ||| | ||||| || |||||||| ||| | || |||||||| || || Sbjct 4313241 TGAAAGTGTTCTTCCATCCTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGG 4313182 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||||||||||| ||| || ||| || | ||| |||||| | || Sbjct 4313181 AGGTATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTC 4313122 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| ||||||||||| ||||| | || ||||| || ||||||||| Sbjct 4313121 TACTTCCAGTGTAATGGTCTTACCGGTGAGAGTCTTGACGAAGATTTGCATT 4313070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 20986 CCTTT-TGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAA 21044 ||||| |||||||| ||||| | ||||| | |||| |||||||| ||||| || | Sbjct 4310968 CCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 4310909 Query 21045 ATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGG 21104 || |||| ||||||||| ||| | || |||||||| ||||| ||||| | Sbjct 4310908 ATGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCACATTC 4310849 Query 21105 CCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACA 21164 ||| ||| || | | |||| || | ||| ||||||||||| || | || || || Sbjct 4310848 TCGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACG 4310789 Query 21165 AATATTTGCAT 21175 || || ||||| Sbjct 4310788 AAGATCTGCAT 4310778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| |||||||| ||||| | ||||| | |||| |||||||| ||||| || | | Sbjct 2636743 CCTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 2636802 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | |||| ||||||||| ||| | || |||||||| ||||| ||||| | Sbjct 2636803 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCT 2636862 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| ||| || | |||| || | ||| ||||||||||| || | || || || | Sbjct 2636863 CGATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 2636922 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 2636923 AGATCTGCAT 2636932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422193656926976