Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq281 116 4e-21 >seq2 Length=39772498 Score = 150 bits (166), Expect = 2e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || || || Sbjct 4310778 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGCC 4310837 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| ||||| |||||| | |||||| Sbjct 4310838 GACACTATCGAGAATGTGAAGGCCAAGATTCARGACAAGGAGGGAATCCCCCCAGACCAG 4310897 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| ||||| |||||||| |||| |||||||||| |||||||||| Sbjct 4310898 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 4310957 Query 40870 ATCCAGAA 40877 || ||||| Sbjct 4310958 ATTCAGAA 4310965 Score = 149 bits (164), Expect = 6e-31 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || || | Sbjct 2636932 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCA 2636873 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| ||||| |||||| | |||||| Sbjct 2636872 GACACTATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAG 2636813 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| ||||| |||||||| |||| |||||||||| |||||||||| Sbjct 2636812 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 2636753 Query 40870 ATCCAGAAGG 40879 || ||||||| Sbjct 2636752 ATTCAGAAGG 2636743 >seq281 Length=276453 Score = 116 bits (128), Expect = 4e-21 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| || |||| ||||| ||||| |||||| | |||||||| |||||||||| ||| Sbjct 164623 AAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGCGACTCATCTTCGCT 164682 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| |||||||| |||| ||||||||| |||||||||||| ||||| | Sbjct 164683 GGCAAGCAGCTGGAAGACGGKCGCACCCTCTCCGACTACAACATTCAGAARG 164734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515137177103360