Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq2935 116 4e-21 seq6 114 1e-20 seq3 111 2e-19 seq1453 109 6e-19 seq5 109 6e-19 seq2742 104 3e-17 seq10 104 3e-17 seq1688 100 3e-16 seq1317 86.0 7e-12 >seq2 Length=39772498 Score = 120 bits (132), Expect = 3e-22 Identities = 150/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 42985 ATGTGCTCTCCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTA 43043 |||| ||| ||||| ||||| ||||| || | || || ||| |||| || |||||||| Sbjct 4310976 ATGT-CTCACCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTG 4310918 Query 43044 CCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG- 43102 |||||||| ||||||||||||||||| | || | | ||||||||| ||| | || | Sbjct 4310917 CCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCY-TGAATCTTGGC 4310859 Query 43103 TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 || | || | | |||||| || ||||| |||| |||||||| ||||| || || Sbjct 4310858 CTTCACATTCTCGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAG 4310799 Query 43163 CGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| ||||| Sbjct 4310798 GGTCTTCACGAAGATCTGCAT 4310778 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| || | || || ||| |||| || |||||||| |||||||| | Sbjct 2636743 CCTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 2636802 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 |||||||||||||||| | || | | |||||||||| ||| | || | || | || Sbjct 2636803 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC-TGAATCTTGGCCTTCACATTC 2636861 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || ||||| |||| |||||||| ||||| || || ||||| || Sbjct 2636862 TCGATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACG 2636921 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 2636922 AAGATCTGCAT 2636932 >seq2935 Length=43313 Score = 116 bits (128), Expect = 4e-21 Identities = 81/91 (89%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 42195 AAAAATT--CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 42138 Query 60117 TCACCACTATACTACCGAGGATTGAATATAT 60147 | ||||||||||||||||||| |||| |||| Sbjct 42137 TTACCACTATACTACCGAGGAATGAAAATAT 42107 >seq6 Length=23341858 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 12061048 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 12060989 Query 60125 ATACTACCGAGGATTGAATAT 60145 |||||||||||||||||| || Sbjct 12060988 ATACTACCGAGGATTGAAGAT 12060968 >seq3 Length=34716904 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 20410796 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 20410737 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | |||||||||||||||||||||| Sbjct 20410736 TTACCACTATACTACCGAGGATTG 20410713 >seq1453 Length=94963 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 29402 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 29461 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 29462 TACTACCGAGGAATG 29476 >seq5 Length=36881487 Score = 109 bits (120), Expect = 6e-19 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 10423054 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 10423113 Query 60125 ATACTACCGAGGATTGAA 60142 ||||||||||||| |||| Sbjct 10423114 ATACTACCGAGGAATGAA 10423131 >seq2742 Length=45117 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 44837 CTCCCCGGAGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 44896 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 44897 TACTACCGAGGA 44908 >seq10 Length=51758932 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 42468738 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 42468797 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 42468798 TACTACCGAGGA 42468809 >seq1688 Length=77306 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 15299 TTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 15240 Query 60124 TATACTACCGAGGA-TTGAATA 60144 ||||||||||| || ||| ||| Sbjct 15239 TATACTACCGAAGACTTGTATA 15218 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 27765 AAAAAGTTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 27706 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||| || Sbjct 27705 TACCACTATACTACCGAAGA 27686 >seq1317 Length=91038 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60072 GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 60131 ||| ||||||| |||||||||||||||||||||||| || |||| ||||||||||||| Sbjct 2321 GGCGGGGAATCCAACCCTGGTCTCCCGCGTGACAGGTGGGGATACCTACCACTATACTAC 2380 Query 60132 CGAGGAT 60138 || |||| Sbjct 2381 CGTGGAT 2387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571726566638080