Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7 127 2e-24 >seq7 Length=109384913 Score = 127 bits (140), Expect = 2e-24 Identities = 136/177 (77%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 ||| ||||| || || | ||||||||||||||||||||| ||||| || ||||| ||||| Sbjct 105116701 ATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATGGCTATTTGAAA 105116760 Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGT 16625 |||||||||||| || ||||||| | ||| ||||| || | || ||||| | | || Sbjct 105116761 ACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACT-GAATCTTTCCACAAGGT 105116819 Query 16626 TTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAT 16682 |||| ||||| || ||||| || ||||| || || || | ||||| || |||| Sbjct 105116820 TTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTTGATGAAAT 105116876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTC 16783 ||||||| || || |||||| |||||||||| ||||| |||||||||||||||||| | Sbjct 105117153 TTTGATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACATTTGC 105117212 Query 16784 CATATGTCTTCGTAAACAATAGGAAACACAACA 16816 || ||||| | ||| |||| || || |||||| Sbjct 105117213 CAAATGTCATGGTATTCAATCGGGAAGACAACA 105117245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462438368089600