Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq4487 89.7 7e-13 >seq4487 Length=19373 Score = 89.7 bits (98), Expect = 7e-13 Identities = 167/244 (68%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 35882 CTGATTCAAATGATATAtttttttGTTGAAGAAAAGAATGAAAACCCAAAACACCAATTC 35941 |||||||||| | | |||| ||| | ||| ||||||||||||| || |||| | Sbjct 17667 CTGATTCAAAAGGAACCATTTTACTTTGTAAAAATGAATGAAAACCCATCACGCCAAGAC 17608 Query 35942 CTATACTTCTTTCCTTTTTTGCCGAGTTCACCGCACGAGATAT---AGTTGGAGGTGCCT 35998 | ||||| | || || |||| || | || || ||| | |||| ||| | Sbjct 17607 CGATACTACGCTCTCTTATTGCGGAATATTTTGCTCGCTGTATTTCATTTGG---TGCTT 17551 Query 35999 TTTCTATAAAAATTGTTAAAGCATTATCCAACATTTCCATTACATCTTTTATAAAAAGAT 36058 | ||| ||| ||| ||||||| | | ||||| ||||| ||| ||||| | Sbjct 17550 GGTTTATGAAATCCTCTAATACATTATCAAGAAAACGCATTATATCTTCTATGAAAAGCT 17491 Query 36059 CGTTATCTTTCCATTCATCATAATATTCTAAATTTAAAGAAGATAAACAACAGACAGCTG 36118 | |||||||||||||| || || ||||| | ||||| || ||||||||||| ||||| | Sbjct 17490 CATTATCTTTCCATTCTTCGTAGTATTCAAGATTTACGGATGATAAACAACATACAGCAG 17431 Query 36119 TTCG 36122 | || Sbjct 17430 TGCG 17427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679706173547520