Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 327 1e-84 seq7 163 3e-35 seq2 111 1e-19 >seq4 Length=10813142 Score = 327 bits (362), Expect = 1e-84 Identities = 752/1137 (66%), Gaps = 11/1137 (1%) Strand=Plus/Minus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 |||| ||||| || |||| | || || || || || || ||||||||||| ||||| Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTT 9996600 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAG 22228 || || |||| ||||| |||| ||||| || || || | || ||| || | ||| Sbjct 9996599 TTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCA 9996540 Query 22229 TCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATA 22288 | |||| | |||| ||||| || ||||| || || || || ||||| |||||||| Sbjct 9996539 GCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATC 9996480 Query 22289 TTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAAC 22348 | | | | | || || ||||| |||||||| ||||| | | || || | Sbjct 9996479 TGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCC 9996420 Query 22349 GGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTA 22408 || || || || | |||| |||||| || || | | || ||||| || | Sbjct 9996419 GGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTCA 9996360 Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 || ||||||||| | |||| | ||| | | ||| ||| ||||||| ||||| ||| Sbjct 9996359 CTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAAC 9996300 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | || | || ||| || || | ||| | || || || ||||||||| Sbjct 9996299 TCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTG 9996240 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 ||||| |||||||| || || ||||| || ||||| || || | || || ||||||||| Sbjct 9996239 TTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTC 9996180 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | || || | |||||| || || || ||| ||||||| | | || ||| Sbjct 9996179 ACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAGTC 9996120 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 ||| ||||||| ||||| || | | || ||| | || | ||||| ||||| Sbjct 9996119 ACA---CCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTC 9996063 Query 22709 TCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATA 22768 ||||| || || | || | ||||| || || || |||||||| || ||||| || || Sbjct 9996062 TCGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATG 9996003 Query 22769 GTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATC 22828 || || || |||| ||||||| | | | | || ||| | || | ||||| Sbjct 9996002 GTTTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATT 9995943 Query 22829 ATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTC 22888 | | ||| || || |||| ||| || | || || || || ||||||| ||| || Sbjct 9995942 AGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTG 9995883 Query 22889 GACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTG 22948 || | ||| || || | | ||||| |||| | ||| || | |||||| || || Sbjct 9995882 GAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTC 9995823 Query 22949 GTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG----CCCGATTGTAC 23004 ||||| | ||| | || |||| |||||| | || ||| Sbjct 9995822 GTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAATT---- 9995767 Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 ||||||| |||||||||| |||||||| | || || || || | ||| || || | Sbjct 9995766 AACAAACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGGTGAGCT 9995707 Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 || || ||||| || || ||||||||||||||||| ||||| || | ||| |||||| Sbjct 9995706 ATATTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTT 9995647 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 | || | || || | |||||| || |||||||| || || || || || ||||| || Sbjct 9995646 GGACTTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGA 9995587 Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTC 23241 ||| ||||| || |||| | ||| || | ||| || || ||||||||||| Sbjct 9995586 CTCRATGATAGCGTGCCAAAGCTGCTGTGCCTTAACTTGTTTTACATACCTGCCTTC 9995530 Score = 118 bits (130), Expect = 9e-22 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 23268 CAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCC 23327 |||| ||| | || | || || | ||||||| ||| | || ||||||||||||| Sbjct 9986529 CAAAGTCGTCCCCCCAGCATTCAGAGAGGCCGGACGAGTTGTGAGGGCACATGAGACTCC 9986470 Query 23328 ACATTGAGTCATTTTCAACGCGTCT-CATAAAAAGATCCGGTATCCATAGAGCGTAGAAC 23386 | || || || || | ||| |||||| || || || ||||| || || || ||| Sbjct 9986469 AGTCCTCGTTCTTCTCTACTC-TCTCCATAAATAGGTCAGGAATCCACAGGGCATAAAAC 9986411 Query 23387 AGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAAC 23446 || || | |||||| || ||||| ||||| ||||| ||||||| |||| || || ||| Sbjct 9986410 AGATCTCTGGCGCGGACTTCCTCCTTGCCTGTGTTTTTTTTCAGGTCCAGGAACTCAAAC 9986351 Query 23447 ACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 || || |||||||| ||||| ||||||| ||||| || || || Sbjct 9986350 ACATCAGCATGCCATGGCTCCAGGTAAATTGCAAATGCTCCTGG 9986307 >seq7 Length=109384913 Score = 163 bits (180), Expect = 3e-35 Identities = 152/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||||||| |||| || ||||| || | || || || || ||||| ||||| |||||||| Sbjct 105116884 TGAGAGATATTTCATCAAACATGTCCTAGCATTCTTTGCYGCATCTGATGGCATTGTTAA 105116825 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 || || | || |||||||| ||||||||||||||||| || ||||| |||||||| Sbjct 105116824 TGAAAACCTTGTGGAAAGATTCAGTCAAGAAGTGCAAGTGACCGAAGCGAGGTGCTTTTA 105116765 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || |||||| | ||||| || ||| | ||||||||||||||| || ||||| ||||| Sbjct 105116764 TGGTTTTCAAATAGCCATCGAGAACATTCATTCAGAAATGTATAGTCTCCTCATTGATAC 105116705 Query 57848 GTACGTGAAGGACA 57861 || ||||| |||| Sbjct 105116704 ATATGTGAATGACA 105116691 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 || ||||| || || ||||| ||||| | ||||||||||| ||| | | || Sbjct 105115227 CTTTTCAATGCAATTGAAACCATGCCATGTGTGAAGAAGAAGGCAGATTGGGCCTTAGAA 105115168 Query 57939 TGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 ||||| | || || ||||| |||| || || |||| || || || || || || Sbjct 105115167 TGGATCAGCTCCGAGACTGCCACATTCGGAGAACGGATAATTGCATTTGCAGCTGTTGAG 105115108 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058 || || || ||||| || |||||||| ||||| |||||| |||| || || || || ||| Sbjct 105115107 GGCATCTTTTTTTCTGGTAGCTTTGCTGCAATTTTTTGGTTGAAAAAGCGAGGTCTTATG 105115048 Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 || ||||| || || ||||| || | || || || || |||| Sbjct 105115047 CCAGGCCTCACATTCAGCAATGAACTCATCTCCCGAGATGAGG 105115005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 || ||||||||| ||| ||||| | ||||| | || ||||||||||| | ||| Sbjct 105117277 GAGCCACTTTTGAGAGAAAATCCAAAGCGTTTTGTTGTCTTCCCGATTGAATACCATGAC 105117218 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | ||||| |||||||| || || || |||||||| | |||||||| ||||| Sbjct 105117217 ATTTGGCAAATGTATAAAAAGGCTGAGGCTTCATTTTGGACTGCAGAAGAAGTTGACCTA 105117158 Query 57630 TCTAAGG 57636 || |||| Sbjct 105117157 TCAAAGG 105117151 >seq2 Length=39772498 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||||||| || |||||| |||| || || |||| Sbjct 2636932 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCA 2636873 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || | || ||||||||| || | || || |||||| Sbjct 2636872 GACACTATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAG 2636813 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| || || ||||||||||| ||| |||||||| Sbjct 2636812 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGAC 2636777 Score = 107 bits (118), Expect = 2e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||||||| || |||||| |||| || || || || Sbjct 4310778 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGCC 4310837 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || | || |||||||| || | || || |||||| Sbjct 4310838 GACACTATCGAGAATGTGAAGGCCAAGATTCARGACAAGGAGGGAATCCCCCCAGACCAG 4310897 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| || || ||||||||||| ||| |||||||| Sbjct 4310898 CAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGAC 4310933 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || || || || || || | || || ||| |||| Sbjct 4313071 ATGCAAATCTTCGTCAAGACTCTCACCGGTAAGACCATTACACTGGAAGTAGAAGCGTCT 4313130 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || ||| | ||| |||||||||||| | || || || || Sbjct 4313131 GATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCAA 4313190 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATTAT 31369 ||| | ||||| || || |||||||| | || || | | | ||| | | || || Sbjct 4313191 CAGAGACTAATYTTTGCCGGCAAACAACTTGAGGA-TGGAAGAACACTTTCA--GACTAC 4313247 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| |||||||||||||| ||| | || | || |||| Sbjct 4313248 AACATCCAGAAAGAATCAACTCTTCATCTGGTTCTTCGCCTTCGTGGTGGTA 4313299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445695433989120