Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 349 4e-91 seq7 145 1e-29 >seq4 Length=10813142 Score = 349 bits (386), Expect = 4e-91 Identities = 738/1096 (67%), Gaps = 16/1096 (1%) Strand=Plus/Minus Query 62040 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 62099 ||||| || |||||||||||| | | ||| || || || || ||||| ||||| |||||| Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTT 9996600 Query 62100 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 62159 ||||| || | |||| ||||| ||||||||| || || || | || | || || Sbjct 9996599 TTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCA 9996540 Query 62160 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62219 || || ||||| || | || || |||||||| ||||| || || | ||||| ||||| Sbjct 9996539 GCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATC 9996480 Query 62220 TTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 62279 | | |||| ||| || | ||| ||||||| || ||||| | ||| || || || Sbjct 9996479 TGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCC 9996420 Query 62280 GGAAG---GTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCA 62336 || | || | | || || ||||| || | | || || | || || || ||| Sbjct 9996419 GGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTCA 9996360 Query 62337 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAAT 62396 | ||| || |||||| | | | || || || || |||| || |||||||| Sbjct 9996359 CTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAAC 9996300 Query 62397 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTA 62456 ||||| || | ||| || |||||||| ||||| |||| || || || | || ||||| Sbjct 9996299 TCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTG 9996240 Query 62457 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62516 ||||| | || || ||||| || || || ||||||||||| | | | | ||||| Sbjct 9996239 TTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTC 9996180 Query 62517 AGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTA 62574 | ||| |||| | | ||||| | ||||||| |||||| ||| | | | || Sbjct 9996179 ACACC--ATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAG 9996122 Query 62575 CAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTA 62633 ||| || || |||||||| ||||| | | || ||||| |||| || Sbjct 9996121 TCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGAC-ATCCTTCATACGTC 9996063 Query 62634 TCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATG 62693 || ||||| || ||||| || || | |||||| ||||| ||||| ||||| |||||| Sbjct 9996062 TCGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATG 9996003 Query 62694 GTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 62753 |||||||| || | ||| | | ||| || || || || ||| | Sbjct 9996002 GTTTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATT 9995943 Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813 || || || || || || | ||||| | || || || || |||| || ||| | || Sbjct 9995942 AGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTG 9995883 Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873 |||| || ||||| | || ||||| ||||| |||||| || || || ||||| || Sbjct 9995882 GAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTC 9995823 Query 62874 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGCCCATCTATTAC 62929 | || |||| || | ||| || |||| |||||| | | | ||| | | || Sbjct 9995822 GTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAAT-TAAC 9995764 Query 62930 AAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGC-AT 62988 ||||||||| | |||| || |||| |||||||| || | ||||| || | || || Sbjct 9995763 AAACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGG-TGAGCTAT 9995705 Query 62989 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 63048 ||| | ||||| ||||| ||||| ||||||||||| ||||| | ||| || || || Sbjct 9995704 ATTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGG 9995645 Query 63049 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63108 ||| ||||||| |||||||||||||| ||| | || || || ||||| | ||| || | Sbjct 9995644 ACTTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACT 9995585 Query 63109 CTATAATCGCTTTCCA 63124 | || || || | ||| Sbjct 9995584 CRATGATAGCGTGCCA 9995569 Score = 113 bits (124), Expect = 6e-20 Identities = 168/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 |||||||| || ||||| | ||||| || ||||| || || || | || ||| || | Sbjct 9984178 TTGTTTCCCCCTTGATCAACATATCTCGCYGTGTTGTTGTACACCCGCAGCATAGGGACT 9984119 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536 || || || ||| | ||||| || || | || |||| |||| | |||||||| | Sbjct 9984118 ATCCCATTGGATGTCCCATTTGTCCCAGCAATGTAGCTTCCAGTTGCACGAATGC----A 9984063 Query 63537 ATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 || ||| ||||| ||||||||||| ||| || |||| ||| || | || | || Sbjct 9984062 ATGGATGTTAAGACCAATTCCCCCTGCAGATTTGGAAATTAGTGCACACTGCTTAAGTGT 9984003 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGA 63646 ||||||||| ||||| ||||| ||||| ||| |||||| || ||||| || || Sbjct 9984002 GTCATAGATTCCTTCAATGCTGTCATCTTTCATTGTTAA-CAGGAAACAACTGGA 9983949 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 ||| || || ||||||||||| ||||| | || ||||| || || || | |||||||| Sbjct 9975103 TTTCTTAGTCTCCTTGTGTAGGTTTGACACAGCGATTCTAGCAGCAAGGACAGCATAATC 9975044 Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135 || |||| || || ||||| || |||| || ||||| ||||||| || || || Sbjct 9975043 TGGGTGTTTGGTTGTCATTGTGGCGGCAGTTTCAGCAGCCAGGTTGTCCAACTCGACGGT 9974984 Query 64136 TGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 ||| || ||| ||||| ||| ||||| |||| Sbjct 9974983 TGTGACACCAGAATATAGTCCACTTATAACTTTCA 9974949 >seq7 Length=109384913 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33839 ACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33898 ||| || || ||||| ||||| || | |||||||||||||| ||||||||||| || || Sbjct 105116689 ACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGAT 105116748 Query 33899 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCG 33958 ||| || ||||| || || || || || || ||||| | ||||||||| || |||| Sbjct 105116749 GGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCT 105116808 Query 33959 TTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTT 34018 ||| | | |||||||| || || |||||| || ||||| || || | |||||||| Sbjct 105116809 TTCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTT 105116868 Query 34019 TATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 34056 || |||||| | || ||||| | |||| ||||||| Sbjct 105116869 GATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCAAT 105116906 Score = 102 bits (112), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 34063 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 34122 || |||| |||| || |||||||| | ||||||||||| ||||| ||||||||||||| Sbjct 105117149 TACCTTT-GATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACA 105117207 Query 34123 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 | | ||| |||||||| |||| || ||||| | |||||| | ||||||||| Sbjct 105117208 TTTGCCAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTT 105117260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629717333038080