Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13]
12,736 sequences; 1,042,628,579 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 251 7e-62
seq7 114 1e-20
>seq4
Length=10813142
Score = 251 bits (278), Expect = 7e-62
Identities = 731/1110 (66%), Gaps = 20/1110 (2%)
Strand=Plus/Minus
Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855
|| |||| || |||| | ||| | ||||| | || ||||||||| || ||||||||
Sbjct 9996653 GTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTTTTTAGG 9996594
Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915
|||||| |||| ||||| ||||||||| || || || | | | || | | | ||
Sbjct 9996593 CCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCAGCAATG 9996534
Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975
| || | | ||| || |||||||| || || ||||| | || || ||||| | |
Sbjct 9996533 TGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATCTGGAGT 9996474
Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG---T 37032
|| || ||||| ||||||||||| || ||||| | ||||| | || || |
Sbjct 9996473 ATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCCGGGATT 9996414
Query 37033 AAATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTC 37092
|||| | ||| || || || || | | || ||||| || || || ||| | | |
Sbjct 9996413 CTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTCACTGTCC 9996354
Query 37093 CACATATTTCTA-CT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTC 37150
|||| | | | || | || || || | ||||| | || || || || || ||||
Sbjct 9996353 CACAAA--CCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAACTCTC 9996296
Query 37151 CAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTAC 37210
| |||| ||| |||| || || ||||| | || ||||| |||| ||| ||||| || |
Sbjct 9996295 CTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTGTTTC 9996236
Query 37211 TTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATC 37270
| ||| || | ||||| || |||||||| ||||| | ||||| ||||||| |
Sbjct 9996235 CGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTCACAC 9996176
Query 37271 CATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTA 37330
|||||| | |||| | | |||||| | ||||||||| ||| || || ||
Sbjct 9996175 CATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAGTCACAC 9996116
Query 37331 ACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAG 37390
|||||| || || || |||||||| ||||| ||||| | | | ||| ||||| || |
Sbjct 9996115 CCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTCTCGTATG 9996056
Query 37391 GTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGA 37450
| || | | || || || ||||||| || | ||| | || || || ||||| |
Sbjct 9996055 GCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATGGTTTCAA 9995996
Query 37451 AAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCC-CAATAATATA 37509
||||||| ||| ||| | || | || || ||||| | | |||| || || ||
Sbjct 9995995 AAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGA-AGCCGCATTAGGATG 9995937
Query 37510 AACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT--AGATC 37567
|| |||| |||| ||| || | ||||| || ||||||| || || | || |||
Sbjct 9995936 AAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTGGAGAGT 9995877
Query 37568 TAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTA 37627
| | | ||| |||||||| |||||| |||||| || || || ||||| | |
Sbjct 9995876 TTG--GCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTCGTCA 9995819
Query 37628 GTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAA-ATACGTTATTATTAACAAATT 37684
|| ||| | | | | | |||| | || | ||| | || |||||||||
Sbjct 9995818 CTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAATTAACAAACA 9995759
Query 37685 TACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTA-CTAAATTGT 37743
| | | | ||| || | | ||||| ||||||| ||||| || | ||| |||
Sbjct 9995758 TGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATC-AGGTGAGCTATATTCC 9995700
Query 37744 ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTT 37803
| ||||||||| || ||||| || | | || ||||| | ||| || ||||| ||
Sbjct 9995699 ACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGGACTTC 9995640
Query 37804 TTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATA 37863
| ||||| | ||| ||||| || || || || || ||| ||||| || | ||| ||
Sbjct 9995639 CTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACTCRATG 9995580
Query 37864 ATAGATTTCCATAAACTTCT-TGCTTTAAC 37892
|||| | ||| || || || ||| |||||
Sbjct 9995579 ATAGCGTGCCA-AAGCTGCTGTGCCTTAAC 9995551
>seq7
Length=109384913
Score = 114 bits (126), Expect = 1e-20
Identities = 141/190 (74%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 11897 ACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956
||||||||||| || | | ||||||||||||||||||||| || || || |||||||||
Sbjct 105116699 ACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATGGCTATTTGA 105116758
Query 11957 AATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTTCCGCTAA 12015
|| ||||| || || | || || | ||| || || || | ||||||||| | |
Sbjct 105116759 AAACCATAAAAGCACCTCGCTTC-GGTCACTTGCACTTCTTGACTGAATCTTTCCACAAG 105116817
Query 12016 ATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTA 12075
|| ||||| ||||| |||||| | ||||| |||||||| | |||||| || || ||
Sbjct 105116818 GTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTTGATGAAATA 105116877
Query 12076 TTTTTCGTCT 12085
| | || |||
Sbjct 105116878 TCTCTCATCT 105116887
Score = 104 bits (114), Expect = 2e-17
Identities = 148/206 (72%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725
|| |||||||| ||||| | || ||||| | ||||| ||||| | |||||| ||
Sbjct 105115019 ATGAGTTCATTGCTGAATGTGAGGCCTGGCATAAGACCTCGCTTTTTCAACCAAAAAATT 105115078
Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785
|||||||| ||||||||| || || ||||| |||||||||||||| | || | ||||
Sbjct 105115079 GCAGCAAAGCTACCAGAAAAAAAGATGCCCTCAACAGCTGCAAATGCAATTATCCGTTCT 105115138
Query 11786 CC--ATATACCTTGTTGCTAGAT-ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842
|| || | | | || | ||||||| | ||||||||| || ||||| || ||
Sbjct 105115139 CCGAATGTGGCAGTCTCGGAGCTGATCCATTCTAAGGCCCAATCTGCCTTCTTCTTCACA 105115198
Query 11843 CATTCCATTGTTTCTATAGCGTTAAA 11868
||| ||| ||||| || || || ||
Sbjct 105115199 CATGGCATGGTTTCAATTGCATTGAA 105115224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468450210851840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |