Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 251 7e-62 seq7 114 1e-20 >seq4 Length=10813142 Score = 251 bits (278), Expect = 7e-62 Identities = 731/1110 (66%), Gaps = 20/1110 (2%) Strand=Plus/Minus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 || |||| || |||| | ||| | ||||| | || ||||||||| || |||||||| Sbjct 9996653 GTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTTTTTAGG 9996594 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 |||||| |||| ||||| ||||||||| || || || | | | || | | | || Sbjct 9996593 CCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCAGCAATG 9996534 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975 | || | | ||| || |||||||| || || ||||| | || || ||||| | | Sbjct 9996533 TGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATCTGGAGT 9996474 Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG---T 37032 || || ||||| ||||||||||| || ||||| | ||||| | || || | Sbjct 9996473 ATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCCGGGATT 9996414 Query 37033 AAATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTC 37092 |||| | ||| || || || || | | || ||||| || || || ||| | | | Sbjct 9996413 CTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTCACTGTCC 9996354 Query 37093 CACATATTTCTA-CT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTC 37150 |||| | | | || | || || || | ||||| | || || || || || |||| Sbjct 9996353 CACAAA--CCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAACTCTC 9996296 Query 37151 CAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTAC 37210 | |||| ||| |||| || || ||||| | || ||||| |||| ||| ||||| || | Sbjct 9996295 CTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTGTTTC 9996236 Query 37211 TTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATC 37270 | ||| || | ||||| || |||||||| ||||| | ||||| ||||||| | Sbjct 9996235 CGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTCACAC 9996176 Query 37271 CATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTA 37330 |||||| | |||| | | |||||| | ||||||||| ||| || || || Sbjct 9996175 CATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAGTCACAC 9996116 Query 37331 ACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAG 37390 |||||| || || || |||||||| ||||| ||||| | | | ||| ||||| || | Sbjct 9996115 CCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTCTCGTATG 9996056 Query 37391 GTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGA 37450 | || | | || || || ||||||| || | ||| | || || || ||||| | Sbjct 9996055 GCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATGGTTTCAA 9995996 Query 37451 AAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCC-CAATAATATA 37509 ||||||| ||| ||| | || | || || ||||| | | |||| || || || Sbjct 9995995 AAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGA-AGCCGCATTAGGATG 9995937 Query 37510 AACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT--AGATC 37567 || |||| |||| ||| || | ||||| || ||||||| || || | || ||| Sbjct 9995936 AAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTGGAGAGT 9995877 Query 37568 TAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTA 37627 | | | ||| |||||||| |||||| |||||| || || || ||||| | | Sbjct 9995876 TTG--GCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTCGTCA 9995819 Query 37628 GTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAA-ATACGTTATTATTAACAAATT 37684 || ||| | | | | | |||| | || | ||| | || ||||||||| Sbjct 9995818 CTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAATTAACAAACA 9995759 Query 37685 TACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTA-CTAAATTGT 37743 | | | | ||| || | | ||||| ||||||| ||||| || | ||| ||| Sbjct 9995758 TGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATC-AGGTGAGCTATATTCC 9995700 Query 37744 ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTT 37803 | ||||||||| || ||||| || | | || ||||| | ||| || ||||| || Sbjct 9995699 ACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGGACTTC 9995640 Query 37804 TTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATA 37863 | ||||| | ||| ||||| || || || || || ||| ||||| || | ||| || Sbjct 9995639 CTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACTCRATG 9995580 Query 37864 ATAGATTTCCATAAACTTCT-TGCTTTAAC 37892 |||| | ||| || || || ||| ||||| Sbjct 9995579 ATAGCGTGCCA-AAGCTGCTGTGCCTTAAC 9995551 >seq7 Length=109384913 Score = 114 bits (126), Expect = 1e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 11897 ACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956 ||||||||||| || | | ||||||||||||||||||||| || || || ||||||||| Sbjct 105116699 ACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATGGCTATTTGA 105116758 Query 11957 AATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTTCCGCTAA 12015 || ||||| || || | || || | ||| || || || | ||||||||| | | Sbjct 105116759 AAACCATAAAAGCACCTCGCTTC-GGTCACTTGCACTTCTTGACTGAATCTTTCCACAAG 105116817 Query 12016 ATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTA 12075 || ||||| ||||| |||||| | ||||| |||||||| | |||||| || || || Sbjct 105116818 GTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTTGATGAAATA 105116877 Query 12076 TTTTTCGTCT 12085 | | || ||| Sbjct 105116878 TCTCTCATCT 105116887 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| ||||| | || ||||| | ||||| ||||| | |||||| || Sbjct 105115019 ATGAGTTCATTGCTGAATGTGAGGCCTGGCATAAGACCTCGCTTTTTCAACCAAAAAATT 105115078 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 |||||||| ||||||||| || || ||||| |||||||||||||| | || | |||| Sbjct 105115079 GCAGCAAAGCTACCAGAAAAAAAGATGCCCTCAACAGCTGCAAATGCAATTATCCGTTCT 105115138 Query 11786 CC--ATATACCTTGTTGCTAGAT-ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 || || | | | || | ||||||| | ||||||||| || ||||| || || Sbjct 105115139 CCGAATGTGGCAGTCTCGGAGCTGATCCATTCTAAGGCCCAATCTGCCTTCTTCTTCACA 105115198 Query 11843 CATTCCATTGTTTCTATAGCGTTAAA 11868 ||| ||| ||||| || || || || Sbjct 105115199 CATGGCATGGTTTCAATTGCATTGAA 105115224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468450210851840