Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 331 1e-85 seq7 145 1e-29 >seq4 Length=10813142 Score = 331 bits (366), Expect = 1e-85 Identities = 732/1095 (67%), Gaps = 14/1095 (1%) Strand=Plus/Minus Query 64833 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 64892 ||||| || |||||||||||| | | ||| || || || || ||||| ||||| |||||| Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTT 9996600 Query 64893 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 64952 ||||| || | |||| ||||| ||||||||| || || || | || | || || Sbjct 9996599 TTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCA 9996540 Query 64953 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 65012 || || ||||| || | || || |||||||| ||||| || || | ||||| ||||| Sbjct 9996539 GCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATC 9996480 Query 65013 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 65072 | | |||| ||| || | ||| ||||||| || ||||| | ||| || || || Sbjct 9996479 TGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCC 9996420 Query 65073 GGAAG---GTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 65129 || | || | | || || ||||| || | | || || | || || || ||| Sbjct 9996419 GGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTCA 9996360 Query 65130 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 65189 | ||| || |||||| | | | || || || || | || || ||||| || Sbjct 9996359 CTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAAC 9996300 Query 65190 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 65249 ||||| || | ||| || |||||||| ||||| |||| || || || | || ||||| Sbjct 9996299 TCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTG 9996240 Query 65250 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 65309 ||||| | || || ||||| || || || ||||||||||| | | | | ||||| Sbjct 9996239 TTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTC 9996180 Query 65310 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 65367 | ||| |||| | | ||||| | |||||||| |||||| ||| | | | || Sbjct 9996179 ACACC--ATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAG 9996122 Query 65368 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTA 65426 || || |||||||| ||||| | | || ||||| |||| || Sbjct 9996121 TCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGAC-ATCCTTCATACGTC 9996063 Query 65427 TCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATG 65486 |||||||| || ||||| || || |||||||| ||||| ||||| ||||| |||||| Sbjct 9996062 TCGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATG 9996003 Query 65487 GTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG 65546 ||||| || || | ||| | | ||| || || || || ||| | Sbjct 9996002 GTTTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATT 9995943 Query 65547 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 65606 || || || || || || | ||||| | || || || || |||| || ||| | || Sbjct 9995942 AGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTG 9995883 Query 65607 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 65666 |||| || ||||| | || ||||| ||||| |||||| || || || ||||| || Sbjct 9995882 GAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTC 9995823 Query 65667 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA---TTACA 65723 | || |||| || | ||| || |||| |||||| | | || | | ||| Sbjct 9995822 GTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAATTAACA 9995763 Query 65724 AACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC-ATA 65782 |||||||| | |||| || |||| ||||| || || | ||||| || | || ||| Sbjct 9995762 AACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGG-TGAGCTATA 9995704 Query 65783 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 65842 || | ||||| ||||| ||||| ||||||||||| ||||| | ||| || || || Sbjct 9995703 TTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGGA 9995644 Query 65843 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 65902 ||| ||||||| |||||||||||||| ||| | || || || ||||| | ||| || || Sbjct 9995643 CTTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACTC 9995584 Query 65903 TATAATCGCTTTCCA 65917 || || || | ||| Sbjct 9995583 RATGATAGCGTGCCA 9995569 Score = 127 bits (140), Expect = 3e-24 Identities = 171/235 (73%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 |||||||| || ||||| | ||||| || ||||| || || || | || ||| || | Sbjct 9984178 TTGTTTCCCCCTTGATCAACATATCTCGCYGTGTTGTTGTACACCCGCAGCATAGGGACT 9984119 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 || ||||||||||| ||||| ||||| | || ||||||||| |||||||||| | Sbjct 9984118 ATCCCATTGGATGTCCCATTTGTCCCAGCAATGTAGCTTCCAGTTGCACGAAT----GCA 9984063 Query 66330 ATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385 || ||| ||||| ||||||||||| ||| || |||| ||| || | || | || Sbjct 9984062 ATGGATGTTAAGACCAATTCCCCCTGCAGATTTGGAAATTAGTGCACACTGCTTAAGTGT 9984003 Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGA 66439 |||||||| || || || || ||||| ||| |||||| || ||||| || || Sbjct 9984002 GTCATAGATTCCTTCAATGCTGTCATCTTTCATTGTTAA-CAGGAAACAACTGGA 9983949 >seq7 Length=109384913 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 36415 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 36474 ||| || || |||||||||||||| | |||||||||||||| ||||||||||| || || Sbjct 105116689 ACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGAT 105116748 Query 36475 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCG 36534 ||| |||||||| || || || || || || ||||| | || |||||| || |||| Sbjct 105116749 GGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCT 105116808 Query 36535 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 36594 ||| | | |||||||| || || || ||| || ||||| || || | |||||||| Sbjct 105116809 TTCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTT 105116868 Query 36595 TATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAAT 36632 || |||||| | || | ||| | |||| ||||||| Sbjct 105116869 GATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCAAT 105116906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 || |||| |||| || |||||||| | ||||||||||| ||||| ||||||||||||| Sbjct 105117149 TACCTTT-GATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACA 105117207 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 | | ||| |||||||| |||| ||| || || | |||||| | ||| |||||| Sbjct 105117208 TTTGCCAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTTT 105117261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658068018890240