Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 342 7e-89 seq7 127 3e-24 >seq4 Length=10813142 Score = 342 bits (378), Expect = 7e-89 Identities = 734/1093 (67%), Gaps = 10/1093 (1%) Strand=Plus/Minus Query 78712 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 78771 ||||| || |||||||||||| | | ||| || || || || ||||| ||||| |||||| Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTT 9996600 Query 78772 TTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 78831 ||||| || | |||| ||||||||||||||| || || || | || | || || Sbjct 9996599 TTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCA 9996540 Query 78832 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 78891 || || ||||| || | || || |||||||| ||||| || || | ||||| ||||| Sbjct 9996539 GCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATC 9996480 Query 78892 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 78951 | | |||| ||| || | ||| ||||||| || ||||| | ||| || || || Sbjct 9996479 TGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCC 9996420 Query 78952 GGAAG---GTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCT 79008 || | || | | || || ||||| || | | || || | || || || || Sbjct 9996419 GGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTCA 9996360 Query 79009 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 79068 | ||| || |||||| | | | || || || || | || || ||||| || Sbjct 9996359 CTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAAC 9996300 Query 79069 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTA 79128 ||||| || | ||| || |||||||| ||||| |||| ||||| || | |||||||| Sbjct 9996299 TCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTG 9996240 Query 79129 TTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTA 79188 ||||| | || || ||||| || || || ||||||||||| | | | | ||||| Sbjct 9996239 TTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTC 9996180 Query 79189 AGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACA 79248 | ||| | || ||||| | |||||||| |||||||||| | | || || Sbjct 9996179 ACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAGTC 9996120 Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 ||| ||| | || || || |||||||| |||||| | ||||| || || || Sbjct 9996119 ACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTCTCG 9996060 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 || || || || || || | |||||||| ||||| ||||| ||||| ||||||||| Sbjct 9996059 TATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATGGTT 9996000 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGA 79428 || ||||| | ||| | | ||| | || || || ||| | || Sbjct 9995999 TCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATTAGG 9995940 Query 79429 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAA 79488 || || || || || | ||||| | || || || || |||| || ||| | || || Sbjct 9995939 ATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTGGAG 9995880 Query 79489 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACT 79548 | || ||||| | || ||||| ||||| |||||| || || || |||||||| Sbjct 9995879 AGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTCGTC 9995820 Query 79549 ATTACTTTGACCACATCCTTTAGTTTGAGAAAATC----AAATCGTCCATCTATTACAAA 79604 | || |||| || | |||||| |||| |||||| | | ||||| | | ||||| Sbjct 9995819 ACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAAT-TAACAAA 9995761 Query 79605 CATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC-ATATT 79663 |||||| | || | || |||| ||||| || || | ||||| || | || ||||| Sbjct 9995760 CATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAG-GTGAGCTATATT 9995702 Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723 | || || ||||| || || |||||||| || ||||| | ||| || || || || Sbjct 9995701 CCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGGACT 9995642 Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783 | ||||||| |||||||||||||| ||| | || || || ||||| | ||| || || | Sbjct 9995641 TCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACTCRA 9995582 Query 79784 TAATCGCTTTCCA 79796 | || || | ||| Sbjct 9995581 TGATAGCGTGCCA 9995569 Score = 127 bits (140), Expect = 3e-24 Identities = 171/235 (73%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 |||||||| || ||||| | ||||| || ||||| || || || | || ||| || | Sbjct 9984178 TTGTTTCCCCCTTGATCAACATATCTCGCYGTGTTGTTGTACACCCGCAGCATAGGGACT 9984119 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||||||||| ||||| ||||| | || ||||||||| | |||||||| | Sbjct 9984118 ATCCCATTGGATGTCCCATTTGTCCCAGCAATGTAGCTTCCAGTTGCACGAAT----GCA 9984063 Query 80209 ATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 || ||| ||||| ||||||||||| ||| || |||| ||| || | || | || Sbjct 9984062 ATGGATGTTAAGACCAATTCCCCCTGCAGATTTGGAAATTAGTGCACACTGCTTAAGTGT 9984003 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGA 80318 |||||||| || || ||||| ||||| ||| |||||| || ||||| || || Sbjct 9984002 GTCATAGATTCCTTCAATGCTGTCATCTTTCATTGTTAA-CAGGAAACAACTGGA 9983949 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 ||| || || ||||||||||| ||||| || || ||||| || || | | |||||||| Sbjct 9975103 TTTCTTAGTCTCCTTGTGTAGGTTTGACACAGCGATTCTAGCAGCAAGGACAGCATAATC 9975044 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 ||| |||| || || ||||| || |||| || ||||| ||||||| || || || Sbjct 9975043 TGGGTGTTTGGTTGTCATTGTGGCGGCAGTTTCAGCAGCCAGGTTGTCCAACTCGACGGT 9974984 Query 80808 TGTTACTCCATTATATATTCCTTGGATAACCTTCA 80842 ||| || ||| ||||| ||| ||||| |||| Sbjct 9974983 TGTGACACCAGAATATAGTCCACTTATAACTTTCA 9974949 >seq7 Length=109384913 Score = 127 bits (140), Expect = 3e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 50217 ACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 50276 ||| || || ||||| ||||| || | |||||||||||||| ||||||||||| || || Sbjct 105116689 ACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGAT 105116748 Query 50277 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCG 50336 ||| || ||||| || || || || || || ||||| | ||||||||| || |||| Sbjct 105116749 GGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCT 105116808 Query 50337 TTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 50396 ||| | | |||||||| || || || ||| || ||||| || || | |||||||| Sbjct 105116809 TTCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTT 105116868 Query 50397 TATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 || |||| | | || | || | |||| ||||||| Sbjct 105116869 GATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCAAT 105116906 Score = 102 bits (112), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 50441 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 50500 || |||| |||| || |||||||| | ||||||||||| ||||| ||||||||||||| Sbjct 105117149 TACCTTT-GATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACA 105117207 Query 50501 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 | | ||| |||||||| |||| || ||||| | |||||| | ||||||||| Sbjct 105117208 TTTGCCAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTT 105117260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718154451607040