Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13]
12,736 sequences; 1,042,628,579 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq7 143 3e-29
>seq7
Length=109384913
Score = 143 bits (158), Expect = 3e-29
Identities = 169/226 (75%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 14145 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14204
||||||||||| || | ||||||||||| || || ||||| || || ||||| ||||||
Sbjct 105116702 TATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATGGCTATTTGAAAA 105116761
Query 14205 CCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATT 14263
||||||||||| || ||||| | | ||| ||||| || | |||||||| | | ||
Sbjct 105116762 CCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACT-GAATCTTTCCACAAGGTT 105116820
Query 14264 TTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTG 14323
||||||||| || |||||| || ||||| ||||| | | | ||| || || |||
Sbjct 105116821 TTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTTGATGAAATATCT 105116880
Query 14324 CTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGA 14369
||| || || |||| |||||||| ||| |||||||| |||||
Sbjct 105116881 CTCATCTGGCTTCAGTTGTTTCCAATGGGACAAATCCTTTAAAAGA 105116926
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
||||| || |||||| || ||||||||| || || ||||| || || || || ||
Sbjct 105111369 TAAAACTCGGCATCTAGTGTAAAAACATTGTCTTCCTTGTTCGACATTACACCACACTTC 105111428
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
|| ||||| | ||| | |||||||| |||||||| || || || ||||| || | ||||
Sbjct 105111429 TGGTATTCGCCCACTTTCTTTTCAAAAAAGTTAGTCTTCCCCTCAAGTGAAATGTGTTCC 105111488
Query 13644 ATAAAATCAAATGGATTT 13661
|| || ||||||||||||
Sbjct 105111489 ATGAAGTCAAATGGATTT 105111506
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
||||||||| || ||||| || ||||| | |||||||| | ||||| ||||
Sbjct 105115005 CCTCATCTCGGGAGATGAGTTCATTGCTGAATGTGAGGCCTGGCATAAGACCTCGCTTTT 105115064
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| |||||||| ||||||||||| || ||||| || || |||||||| || ||||| |
Sbjct 105115065 TCAACCAAAAAATTGCAGCAAAGCTACCAGAAAAAAAGATGCCCTCAACAGCTGCAAATG 105115124
Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073
| |||| |||||||| || | || | | | ||||||| | ||||| || |
Sbjct 105115125 CAATTATCCGTTCTCCGAATGTGGCAGTCTCGGAGCTGATCCATTCTAAGGCCCAATCTG 105115184
Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113
|| || || | | | ||| |||||||| ||||| ||
Sbjct 105115185 CCTTCTTCTTCACACATGGCATGGTTTCAATTGCATTGAA 105115224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479651627302400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |