Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7 140 3e-28 >seq7 Length=109384913 Score = 140 bits (154), Expect = 3e-28 Identities = 168/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 13933 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992 ||||||||||| || | ||||||||||| || || ||||| || || ||||| |||||| Sbjct 105116702 TATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATGGCTATTTGAAAA 105116761 Query 13993 CCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTT 14051 |||||||| || || ||||| | | ||| || || || | |||||||| | | ||| Sbjct 105116762 CCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACT-GAATCTTTCCACAAGGTT 105116820 Query 14052 TTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTG 14111 |||||||||||| |||||| || ||||| ||||| | | | ||| || || ||| Sbjct 105116821 TTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTTGATGAAATATCT 105116880 Query 14112 CTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGA 14157 ||| || || |||| |||||||| || |||||||| ||||| Sbjct 105116881 CTCATCTGGCTTCAGTTGTTTCCAATGGGACAAATCCTTTAAAAGA 105116926 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||| || |||||| || ||||||||| || || ||||| || || || || || Sbjct 105111369 TAAAACTCGGCATCTAGTGTAAAAACATTGTCTTCCTTGTTCGACATTACACCACACTTC 105111428 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 || ||||| | ||| | ||||||||||||||||| || || || ||||| || | |||| Sbjct 105111429 TGGTATTCGCCCACTTTCTTTTCAAAAAAGTTAGTCTTCCCCTCAAGTGAAATGTGTTCC 105111488 Query 13432 ATAAAATCGAATGGATTT 13449 || || || ||||||||| Sbjct 105111489 ATGAAGTCAAATGGATTT 105111506 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||| || ||||| || ||||| | |||||||| | ||||| |||| Sbjct 105115005 CCTCATCTCGGGAGATGAGTTCATTGCTGAATGTGAGGCCTGGCATAAGACCTCGCTTTT 105115064 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | |||||||| |||||||| || || ||||| || || |||||||| || ||||| | Sbjct 105115065 TCAACCAAAAAATTGCAGCAAAGCTACCAGAAAAAAAGATGCCCTCAACAGCTGCAAATG 105115124 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | |||| |||||||| || | || | | | ||||||| | ||||| || | Sbjct 105115125 CAATTATCCGTTCTCCGAATGTGGCAGTCTCGGAGCTGATCCATTCTAAGGCCCAATCTG 105115184 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 || || || | | | ||| ||||| ||||||||||| Sbjct 105115185 CCTTCTTCTTCACACATGGCATGGTTTCAATTGCATTGAA 105115224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478512608663040