Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 315 1e-80 seq7 136 5e-27 >seq4 Length=10813142 Score = 315 bits (348), Expect = 1e-80 Identities = 724/1094 (66%), Gaps = 12/1094 (1%) Strand=Plus/Minus Query 70795 TCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGCCTGT 70853 ||||| ||||| ||||||||| | ||| |||||| || || ||||| ||||| || || Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTT-GTCCGCAGATAATACATCCCCGT 9996601 Query 70854 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATC 70913 |||||| || | |||| ||||| ||||||||| || || || | | | || || Sbjct 9996600 TTTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTC 9996541 Query 70914 GGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 70973 || ||||| || || | ||||| |||||||| ||||| || || | ||||| ||||| Sbjct 9996540 AGCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCAT 9996481 Query 70974 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 71033 | | |||| ||| || | ||| ||||||| || ||||| | ||| || || || Sbjct 9996480 CTGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTC 9996421 Query 71034 TGGAAG---GTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTC 71090 || | || | | || || ||||| || | | | || | ||||| || || Sbjct 9996420 CGGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTC 9996361 Query 71091 TTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAA 71150 | ||| || |||||| | | | || || || ||| | || || ||||| || Sbjct 9996360 ACTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAA 9996301 Query 71151 TTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATT 71210 ||||| || | ||| || |||||||| ||||| |||| || || || | || ||||| Sbjct 9996300 CTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATT 9996241 Query 71211 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCT 71270 ||||| | || || ||||| || || || ||||||||||| | | ||| ||||| Sbjct 9996240 GTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCT 9996181 Query 71271 AAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTAC 71330 | |||||||| ||||| | |||||||| |||||| ||| | | | || Sbjct 9996180 CACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAGT 9996121 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATC 71390 || || || |||||| | ||||| |||| || || Sbjct 9996120 CACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTCTC 9996061 Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450 |||||| || ||| || || || |||||||| ||||| ||||| || || |||||||| Sbjct 9996060 GTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATGGT 9996001 Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 71510 ||| ||||| | ||| | | ||| || || || || ||| | || Sbjct 9996000 TTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATTAG 9995941 Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 || || || || || | ||||| | || || || || |||| ||| ||| | || || Sbjct 9995940 GATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTGGA 9995881 Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630 | || ||||| | || ||||| ||||| |||||| || || || ||||| || Sbjct 9995880 GAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTCGT 9995821 Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-----TCTCCCATCTATTACA 71685 | || |||| || | |||||| |||| |||||| | | ||| | || ||| Sbjct 9995820 CACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAATTA--ACA 9995763 Query 71686 AACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATAT 71745 |||| ||| | ||||| || |||| ||||| || || | ||||| || | |||| Sbjct 9995762 AACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGGTGAGCTATAT 9995703 Query 71746 TGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 71805 | | ||| || ||||| ||||| ||||||||||| ||||| | ||| || || || | Sbjct 9995702 TCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGGAC 9995643 Query 71806 TTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCT 71865 || ||||||| |||||||||||||| || | || || || ||||| | ||| || || Sbjct 9995642 TTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACTCR 9995583 Query 71866 ATAATCGCTTTCCA 71879 || || || | ||| Sbjct 9995582 ATGATAGCGTGCCA 9995569 Score = 122 bits (134), Expect = 1e-22 Identities = 171/235 (73%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 |||||||| || ||||| | ||||| || ||||| || || || | || ||| || | Sbjct 9984178 TTGTTTCCCCCTTGATCAACATATCTCGCYGTGTTGTTGTACACCCGCAGCATAGGGACT 9984119 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTA 72291 || |||||||||| ||||| ||||| | || ||||||||| | |||||||| || | Sbjct 9984118 ATCCCATTGGATGTCCCATTTGTCCCAGCAATGTAGCTTCCAGTTGCACGAAT---GC-A 9984063 Query 72292 ATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 || ||| ||||| ||||||||||| ||| || |||| ||| || | || | || Sbjct 9984062 ATGGATGTTAAGACCAATTCCCCCTGCAGATTTGGAAATTAGTGCACACTGCTTAAGTGT 9984003 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGA 72401 |||||||| || || || || ||||| ||| |||||| || ||||| || || Sbjct 9984002 GTCATAGATTCCTTCAATGCTGTCATCTTTCATTGTTAA-CAGGAAACAACTGGA 9983949 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 ||| || || ||||||||||| ||||| || || ||||| || || || | |||||||| Sbjct 9975103 TTTCTTAGTCTCCTTGTGTAGGTTTGACACAGCGATTCTAGCAGCAAGGACAGCATAATC 9975044 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890 ||| |||| || || ||||| || |||| || ||||| ||||||| || || || Sbjct 9975043 TGGGTGTTTGGTTGTCATTGTGGCGGCAGTTTCAGCAGCCAGGTTGTCCAACTCGACGGT 9974984 Query 72891 TGTTACTCCATTATATATTCCTTGGATAACCTTCA 72925 ||| || ||| ||||| ||| ||||| |||| Sbjct 9974983 TGTGACACCAGAATATAGTCCACTTATAACTTTCA 9974949 >seq7 Length=109384913 Score = 136 bits (150), Expect = 5e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42322 ACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381 ||| || || ||||||||||| || | |||||||||||||||||||||||||| || || Sbjct 105116689 ACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGAT 105116748 Query 42382 GGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCG 42441 ||| || ||||| || || || || || || ||||| || || |||||| || |||| Sbjct 105116749 GGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCT 105116808 Query 42442 TTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 42501 ||| | | ||||| || || || || ||| || ||||| || || | |||||||| Sbjct 105116809 TTCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTT 105116868 Query 42502 TATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT 42539 || |||||| | || || || | | || ||||||| Sbjct 105116869 GATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCAAT 105116906 Score = 102 bits (112), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 || |||| |||| || ||||||||| | ||||||||||| || || ||||||||||||| Sbjct 105117149 TACCTTT-GATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACA 105117207 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 | | ||| || ||||| |||| ||| ||||| | |||||| | ||||||||| Sbjct 105117208 TTTGCCAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTT 105117260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671032354639360