Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13]
12,736 sequences; 1,042,628,579 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4 315 1e-80
seq7 136 5e-27
>seq4
Length=10813142
Score = 315 bits (348), Expect = 1e-80
Identities = 724/1094 (66%), Gaps = 12/1094 (1%)
Strand=Plus/Minus
Query 70795 TCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGCCTGT 70853
||||| ||||| ||||||||| | ||| |||||| || || ||||| ||||| || ||
Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTT-GTCCGCAGATAATACATCCCCGT 9996601
Query 70854 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATC 70913
|||||| || | |||| ||||| ||||||||| || || || | | | || ||
Sbjct 9996600 TTTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTC 9996541
Query 70914 GGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 70973
|| ||||| || || | ||||| |||||||| ||||| || || | ||||| |||||
Sbjct 9996540 AGCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCAT 9996481
Query 70974 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 71033
| | |||| ||| || | ||| ||||||| || ||||| | ||| || || ||
Sbjct 9996480 CTGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTC 9996421
Query 71034 TGGAAG---GTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTC 71090
|| | || | | || || ||||| || | | | || | ||||| || ||
Sbjct 9996420 CGGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTC 9996361
Query 71091 TTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAA 71150
| ||| || |||||| | | | || || || ||| | || || ||||| ||
Sbjct 9996360 ACTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAA 9996301
Query 71151 TTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATT 71210
||||| || | ||| || |||||||| ||||| |||| || || || | || |||||
Sbjct 9996300 CTCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATT 9996241
Query 71211 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCT 71270
||||| | || || ||||| || || || ||||||||||| | | ||| |||||
Sbjct 9996240 GTTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCT 9996181
Query 71271 AAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTAC 71330
| |||||||| ||||| | |||||||| |||||| ||| | | | ||
Sbjct 9996180 CACACCATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAGT 9996121
Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATC 71390
|| || || |||||| | ||||| |||| || ||
Sbjct 9996120 CACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGACATCCTTCATACGTCTC 9996061
Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450
|||||| || ||| || || || |||||||| ||||| ||||| || || ||||||||
Sbjct 9996060 GTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATGGT 9996001
Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 71510
||| ||||| | ||| | | ||| || || || || ||| | ||
Sbjct 9996000 TTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATTAG 9995941
Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570
|| || || || || | ||||| | || || || || |||| ||| ||| | || ||
Sbjct 9995940 GATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTGGA 9995881
Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630
| || ||||| | || ||||| ||||| |||||| || || || ||||| ||
Sbjct 9995880 GAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTCGT 9995821
Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-----TCTCCCATCTATTACA 71685
| || |||| || | |||||| |||| |||||| | | ||| | || |||
Sbjct 9995820 CACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAATTA--ACA 9995763
Query 71686 AACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATAT 71745
|||| ||| | ||||| || |||| ||||| || || | ||||| || | ||||
Sbjct 9995762 AACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGGTGAGCTATAT 9995703
Query 71746 TGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 71805
| | ||| || ||||| ||||| ||||||||||| ||||| | ||| || || || |
Sbjct 9995702 TCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGGAC 9995643
Query 71806 TTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCT 71865
|| ||||||| |||||||||||||| || | || || || ||||| | ||| || ||
Sbjct 9995642 TTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACTCR 9995583
Query 71866 ATAATCGCTTTCCA 71879
|| || || | |||
Sbjct 9995582 ATGATAGCGTGCCA 9995569
Score = 122 bits (134), Expect = 1e-22
Identities = 171/235 (73%), Gaps = 10/235 (4%)
Strand=Plus/Minus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|||||||| || ||||| | ||||| || ||||| || || || | || ||| || |
Sbjct 9984178 TTGTTTCCCCCTTGATCAACATATCTCGCYGTGTTGTTGTACACCCGCAGCATAGGGACT 9984119
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTA 72291
|| |||||||||| ||||| ||||| | || ||||||||| | |||||||| || |
Sbjct 9984118 ATCCCATTGGATGTCCCATTTGTCCCAGCAATGTAGCTTCCAGTTGCACGAAT---GC-A 9984063
Query 72292 ATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347
|| ||| ||||| ||||||||||| ||| || |||| ||| || | || | ||
Sbjct 9984062 ATGGATGTTAAGACCAATTCCCCCTGCAGATTTGGAAATTAGTGCACACTGCTTAAGTGT 9984003
Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGA 72401
|||||||| || || || || ||||| ||| |||||| || ||||| || ||
Sbjct 9984002 GTCATAGATTCCTTCAATGCTGTCATCTTTCATTGTTAA-CAGGAAACAACTGGA 9983949
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830
||| || || ||||||||||| ||||| || || ||||| || || || | ||||||||
Sbjct 9975103 TTTCTTAGTCTCCTTGTGTAGGTTTGACACAGCGATTCTAGCAGCAAGGACAGCATAATC 9975044
Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890
||| |||| || || ||||| || |||| || ||||| ||||||| || || ||
Sbjct 9975043 TGGGTGTTTGGTTGTCATTGTGGCGGCAGTTTCAGCAGCCAGGTTGTCCAACTCGACGGT 9974984
Query 72891 TGTTACTCCATTATATATTCCTTGGATAACCTTCA 72925
||| || ||| ||||| ||| ||||| ||||
Sbjct 9974983 TGTGACACCAGAATATAGTCCACTTATAACTTTCA 9974949
>seq7
Length=109384913
Score = 136 bits (150), Expect = 5e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 42322 ACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381
||| || || ||||||||||| || | |||||||||||||||||||||||||| || ||
Sbjct 105116689 ACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGAT 105116748
Query 42382 GGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCG 42441
||| || ||||| || || || || || || ||||| || || |||||| || ||||
Sbjct 105116749 GGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCT 105116808
Query 42442 TTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 42501
||| | | ||||| || || || || ||| || ||||| || || | ||||||||
Sbjct 105116809 TTCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTT 105116868
Query 42502 TATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT 42539
|| |||||| | || || || | | || |||||||
Sbjct 105116869 GATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCAAT 105116906
Score = 102 bits (112), Expect = 1e-16
Identities = 91/113 (81%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605
|| |||| |||| || ||||||||| | ||||||||||| || || |||||||||||||
Sbjct 105117149 TACCTTT-GATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACA 105117207
Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658
| | ||| || ||||| |||| ||| ||||| | |||||| | |||||||||
Sbjct 105117208 TTTGCCAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTT 105117260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671032354639360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |