Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq363 129 9e-25 seq959 84.2 3e-11 seq7 84.2 3e-11 >seq363 Length=233870 Score = 129 bits (142), Expect = 9e-25 Identities = 223/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || || || |||||||| ||||||||| | |||| || ||||||| ||| Sbjct 170321 GGTGACCTAGGACCGGTGTACGGGTTCCAGTGGCGTCACTATGGGGCCAAGTACCAGGAC 170380 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTC 70184 || | ||| ||||| || || || | |||||| |||| || | | || |||| Sbjct 170381 ATGTTTCA-AGATTATTCCGGGCAAGGGATAGATCAACTTGCGGAGA-TAATAAACACCA 170438 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 ||||||| || | || || ||||| || | ||||| ||||| || | || ||| Sbjct 170439 TCAAGACTCGGCCCAGTGACCGGCGGATCATATTATGCTCTTGGAACCCCGGGGACTTGA 170498 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAAT 70304 |||| ||||| || || || ||||||||| ||| ||||| || ||| | || Sbjct 170499 ACCAGATGGCTCTGCCCCCMTGTCACTGTCTGGTGCAGTTCTATGTTGCCGAGGATGAAC 170558 Query 70305 TGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTG 70364 | || || | |||||||| | ||| |||||||| |||||||||||||| ||||||| Sbjct 170559 TTTCGTGTCAATTGTATCAGCGTTCTGCTGACATGGGACTCGGTGTACCCTTCAACATTG 170618 Query 70365 CAAGCTATTCTATGTTGAC 70383 | ||||| || || |||| Sbjct 170619 CCAGCTACGCTTTGCTGAC 170637 >seq959 Length=117881 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 127111 AAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATGTCA 127170 ||||| |||||||| || ||||| | || |||||||| || || || ||||||||||| Sbjct 21299 AAGATTACTCCGGCACGCGGACCACGCAGCGTCTTGTGAGTGGTGGTACTCACAATGTCA 21240 Query 127171 CAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATGTGTGCAATA 127230 | |||||||| || | |||||||| | | || | || || | || || || || Sbjct 21239 CTGTACTCAAACGGACTGGGAATGACCCCGGCAGCTACCAGCCCAGAGATATGGGCCATG 21180 Query 127231 TCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTATAGTCCAAG 127290 || | | || | | ||| | |||| ||||||| ||||| | | ||||||||| Sbjct 21179 TCTGAGAACAAGTATGCCCCGTTTTCATCCGCAATCTGACGGAACCTCTTGTAGTCCAAG 21120 Query 127291 CGCCGAGGATAGCAACTGGTGCCGGC 127316 | |||| || || ||| | || || Sbjct 21119 CAGCGAGAGTAACAGCTGATTCCTGC 21094 >seq7 Length=109384913 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 ||||| || || || ||||||||||| ||||| ||||| ||||| || || |||||| | Sbjct 105115125 GCATTTGCAGCTGTTGAGGGCATCTTTTTTTCTGGTAGCTTTGCTGCAATTTTTTGGTTG 105115066 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 || ||||| || || ||||| || || || ||| || || | || || ||||| ||| Sbjct 105115065 AAAAAGCGAGGTCTTATGCCAGGCCTCACATTCAGCAATGAACTCATCTCCCGAGATGAG 105115006 Query 125553 G 125553 | Sbjct 105115005 G 105115005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740941223375360