Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq3789 104 3e-17 >seq3789 Length=27072 Score = 104 bits (114), Expect = 3e-17 Identities = 183/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 || ||||| | ||| || ||||||| | |||| | || | | ||||||||| Sbjct 7005 CCATGAGTTAAATGTCCACCGCAGTTGAGTGACAATCCAAGTATTGTATCACCCGGAGCA 6946 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || |||| | ||||| || ||||| || ||||| || ||||||||||||||||| Sbjct 6945 AGCAGTGAAGCAAACACTGCTTGATTTGCCTGAGAACCAGAGTGAGGTTGAACGTTTGCA 6886 Query 7058 AAATTGCAACTAAACAG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGC 7116 || || || |||||| || ||| | || || ||||| || || | |||||| | Sbjct 6885 AATTTAACACCAAACAGCTTACAAAGC-CTTTCTATAGCCAGATTTTCAACTTCATCTAC 6827 Query 7117 TTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAA 7176 | | ||||| | ||||| | ||| || ||||| || || ||||| || || || | Sbjct 6826 ATACTCACAGCCACAGTAATATCTTTTACCAGGATAACCTTCTGCATATTTATTAGTCAG 6767 Query 7177 AATAGAACCCTGTGCTTTCATAAC 7200 || |||||||||| ||| ||| || Sbjct 6766 AAAAGAACCCTGTACTTCCATCAC 6743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555274786178560