Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 >seq7 Length=109384913 Score = 100 bits (110), Expect = 2e-16 Identities = 119/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 13428 TATCTATCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483 ||| ||||||| || |||||||||||||||||||| || || || |||||||| ||| Sbjct 105116702 TATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATGGCTATTTGAAAA 105116761 Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTT 13542 |||||||| || || || || | || || ||||| || | |||||||| | | ||| Sbjct 105116762 CCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACT-GAATCTTTCCACAAGGTT 105116820 Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 ||| ||||| || || ||| || ||||| || || || Sbjct 105116821 TTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAG 105116859 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAG-ACATTT 12860 |||||| || |||||| | ||| |||| || ||||| || ||||| ||| ||| || Sbjct 105111368 TTAAAACTCGGCATCTAGTGTAAAAACATTGTCTTCCTTGTTCGACATTACACCACACTT 105111427 Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 | | ||||||| ||| | |||||||||||||| || || || || | ||||| | || Sbjct 105111428 CTGG-TATTCGCCCACTTTCTTTTCAAAAAAGTTAGTCTTCCCCTCAAGTGAAATGTGTT 105111486 Query 12921 CCATAAAATCGAAAGGATTTT 12941 |||| || || || ||||||| Sbjct 105111487 CCATGAAGTCAAATGGATTTT 105111507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430915502911872