Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq7 98.7 2e-15 seq281 87.8 4e-12 >seq2 Length=39772498 Score = 181 bits (200), Expect = 2e-40 Identities = 168/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||||||||| || || ||||| || || ||||| || || Sbjct 4313283 AAGAACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCTGAAAGTGTTCTTCCATC 4313224 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || |||||||| || ||||| ||||| ||||||||||| |||||||||||||| || || Sbjct 4313223 CTCAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGGTATTCCTTCCTTGTC 4313164 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| || || ||||||||||| || | ||||| | |||||| || |||||||| || Sbjct 4313163 CTGGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTACTTCCAGTGTAATGGT 4313104 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| || || || || || || || |||||| Sbjct 4313103 CTTACCGGTGAGAGTCTTGACGAAGATTTGCATT 4313070 Score = 129 bits (142), Expect = 1e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 ||||| ||||||||||| |||||||||||||| || ||||| || || ||||||||||| Sbjct 4312254 ATTAGTCTCTGTTGATCTGGAGGTATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTC 4312195 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||||| | ||||||||| |||||||| ||||||||||| || || || || Sbjct 4312194 TCGATTGTATCAGACGCTTCTACCTCCAGTGTAATGGTCTTACCAGTGAGAGTYTTGACR 4312135 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 4312134 AAGATTTGCATT 4312123 Score = 111 bits (122), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||||||||| || ||||| || || || | |||||||| || || || ||||| || | Sbjct 4310967 CTTTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGA 4310908 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| || || || || ||||| || || || |||||||| || || ||||| | Sbjct 4310907 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCYTGAATCTTGGCCTTCACATTCT 4310848 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || ||| | || ||||| || || || ||||| || || || || || || | Sbjct 4310847 CGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGA 4310788 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 4310787 AGATCTGCAT 4310778 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || ||||| || || || | |||||||| || || || ||||| || || Sbjct 2636745 TTCTGAATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATG 2636804 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || || || || ||||| || || ||||||||||| || || ||||| || Sbjct 2636805 AGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCG 2636864 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | || || | || ||||| || || || ||||| || || || || || || || Sbjct 2636865 ATAGTGTCTGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAG 2636924 Query 104552 ATCTGCAT 104559 |||||||| Sbjct 2636925 ATCTGCAT 2636932 >seq7 Length=109384913 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 268809 ATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTG 268868 |||||||| | | || ||||| || ||| || || || | || || || |||| Sbjct 105116906 ATTGGAAACAACTGAAGCCAGATGAGAGATATTTCATCAAACATGTCCTAGCATTCTTTG 105116847 Query 268869 CAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGA 268928 | | |||||| || ||||| ||||| || || || | ||| ||||||| || || Sbjct 105116846 CYGCATCTGATGGCATTGTTAATGAAAACCTTGTGGAAAGATTCAGTCAAGAAGTGCAAG 105116787 Query 268929 TTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGA 268988 | | ||||| || || ||||| || || || ||||| || || || ||||||||||| | Sbjct 105116786 TGACCGAAGCGAGGTGCTTTTATGGTTTTCAAATAGCCATCGAGAACATTCATTCAGAAA 105116727 Query 268989 TGTACAGTCTATTAATAGATACTTATATAGATGA 269022 |||| ||||| | || ||||| ||| | |||| Sbjct 105116726 TGTATAGTCTCCTCATTGATACATATGTGAATGA 105116693 >seq281 Length=276453 Score = 87.8 bits (96), Expect = 4e-12 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 | |||||||| || ||||| || || || | |||||||| || || || ||||| || | Sbjct 164734 CYTTCTGAATGTTGTAGTCGGAGAGGGTGCGMCCGTCTTCCAGCTGCTTGCCAGCGAAGA 164675 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| || || || || ||||| || || ||||||||||| || || ||||| | Sbjct 164674 TGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCT 164615 Query 104490 C 104490 | Sbjct 164614 C 164614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151210514809088