Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 5e-13 >seq2 Length=39772498 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||| || | ||| ||||| || || | ||| || || | | |||||| ||||| Sbjct 4313279 ACCAGATGAAGAGTTGATTCTTTCTGGATGTTGTAGTC--TGAAAGTGTTCTTCCATCCT 4313222 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || ||||| ||| |||| |||| ||| || ||||||||||| || ||||| ||||| | Sbjct 4313221 CAAGTTGTTTGCCGGCAAARATTAGTCTCTGTTGATCTGGAGGTATTCCTTCCTTGTCCT 4313162 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| || || || ||| || |||| || || || | || ||||| | Sbjct 4313161 GGATTTTAGCTTTTACATTCTCGATTGTATCAGACGCTTCTACTTCCAGTGTAATGGTCT 4313102 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || ||||| || || ||||| ||||| Sbjct 4313101 TACCGGTGAGAGTCTTGACGAAGATTTGCAT 4313071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || | ||||| | || ||||| ||||| || || || || ||| Sbjct 4310932 TCTTCCAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTG 4310873 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||| || ||| |||||| || || || || | |||||| Sbjct 4310872 TCYTGAATCTTGGCCTTCACATTCTCGATAGTGTCGGCCGCCTCCACCTCGAGGGTGATG 4310813 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 || || || || || || ||||| ||||||||||| || || Sbjct 4310812 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATCCTCAC 4310772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448219832040960