Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq12 118 1e-22 seq72 113 6e-21 seq10 100 4e-17 seq8 91.5 2e-14 >seq12 Length=46368093 Score = 118 bits (130), Expect = 1e-22 Identities = 161/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 6152 CCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTTAAT 6211 ||||||||||||| | |||| |||||| |||||| | | |||||| |||| |||||| Sbjct 18693485 CCTTATTACCCTATCAAAGTATAATAAGGCCTATTTGCACTGTTTTTAAAAATGTTTAAT 18693426 Query 6212 TTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGTATT 6271 ||||| |||||||||| | || || |||| ||||| ||| | ||| ||| Sbjct 18693425 TTTGTTTTTGTTTATGATAGAAGTTTTCATTTTAAGTTTATAATTTGTTCCTATGATATC 18693366 Query 6272 GATATAAAAATTAATGATACATTTC-AATGATTGAATGTA-ATATTTTCGATTTTATTCA 6329 | | | ||||| ||| || || | ||||| || | |||||| |||||||| Sbjct 18693365 GTAAGACTGATTAACCATA-ATATCTATTGATTATCTGCAGTTATTTTTCATTTTATTTC 18693307 Query 6330 AAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTTA 6370 |||||||||||||||||| ||||||||||| ||||||| Sbjct 18693306 AAATCTCCCTTAGCTAGGTGTTATTACCCGCAGTTACCTTA 18693266 >seq72 Length=614639 Score = 113 bits (124), Expect = 6e-21 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 6149 AGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTT 6208 |||| |||||| |||||| |||| |||||| | |||| | | ||||| | |||| || Sbjct 462118 AGGCATTATTATCCTACCAAAGTATAATAAGGCATATTTGCATGGTTTCTAAAAATGATT 462059 Query 6209 AATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGTTTATGGCTAGTGT 6268 |||||||| ||| |||||| || | || ||| ||||| ||| | ||| | Sbjct 462058 AATTTTGTTTTTACTTATGGAAGAAGTGACAATTTTAATTTTATATTTTGTTACTATGAT 461999 Query 6269 ATTGATATAAAAATTAATGATACATTTCAATGATTGAATGTAATATTTTCGATTTTATTC 6328 | | | | ||||| ||| | | ||||| || |||||||| |||||||| Sbjct 461998 ACCGTAAGACTTATTAACAATAGAAACTATTGATTATTTGCAATATTTTTAATTTTATTT 461939 Query 6329 AAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTTA 6370 ||||||||| ||||||||||||||||||||| |||||||| Sbjct 461938 CAAATCTCCCGTAGCTAGGCCTTATTACCCGCAGGTACCTTA 461897 >seq10 Length=51758932 Score = 100 bits (110), Expect = 4e-17 Identities = 172/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 6136 ATGCTTAACCCGCAGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTT 6195 ||| || | || ||| |||||||||||||| |||| |||||| |||||| | | ||| Sbjct 40462689 ATGTTTTAGCCATAGGTCTTATTACCCTACCAAAGTATAATAAGGCCTATTTGGATTGTT 40462748 Query 6196 TTTGAAAAAATTTAATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATAGT 6255 ||| |||| |||||||| || || |||||||| ||||| ||| | ||||| | Sbjct 40462749 TTTAAAAATGTTTAATTTGGTTTTGATTTATGGTAGAAATTGCCAATTTAAGTTTATAAT 40462808 Query 6256 TTATGGCTAGTGTATTGATATAAAAATTAATGA----TACATTTCAATGATTGAATGT-- 6309 || | ||| | || |||| | | ||| | | || ||||| ||| Sbjct 40462809 TTGTTCCTA---TGTTACCATAAGGCTGATTGACAATAAAAAACCATTGATTATCTGTGC 40462865 Query 6310 AATATTTTCGATTTTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTT 6369 | ||| || |||||||| ||||| | |||||||| ||||| |||||||| ||||||| Sbjct 40462866 AGTATCTTTTATTTTATTTCAAATCACTCTTAGCTAAGCCTTGTTACCCGCAGGTACCTT 40462925 Query 6370 ATATTTAT 6377 | ||||| Sbjct 40462926 AGTTTTAT 40462933 >seq8 Length=79225393 Score = 91.5 bits (100), Expect = 2e-14 Identities = 216/318 (68%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 6068 TTGCTAAATTTAAGTGATGATTGATCTATAATACCAATTTTATTGATTATAGTATAACTA 6127 || ||| | ||| |||| ||||||| ||| |||| | || | ||||| | | | Sbjct 41232997 TTACTATAATTATTTGATTTTTGATCTCAAATGCCAAATATAGT--TTATAATTCGAATG 41233054 Query 6128 TTTTCAGTATGCTTAACCCGCAGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTC 6187 ||| | |||| || | | || ||||||||||||| | |||| |||||| |||| Sbjct 41233055 TTTGTA-TATGTTTTAGTCATAGACCTTATTACCCTAACAAAGTATAATAAGGATTATTT 41233113 Query 6188 GTAAGGTTTTTGAAAAAATTTAATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCC 6247 ||| |||||| |||| |||||||| | || ||| || | | || ||| | Sbjct 41233114 GTATTGTTTTT-AAAATGTTTAATTTGGATTTCATTTGTGATAGACGTTGCCAAT----- 41233167 Query 6248 ATTATAGTTTATGGCTAGTGTAT-TGATA---TAAAA---ATTAATGATACATTTCAATG 6300 ||| ||||||| | || || ||||| ||| | ||||| ||||| | || Sbjct 41233168 -TTA-AGTTTATAATTTGTTCATATGATAACGTAAGACTGATTAACAATACAAACTATTG 41233225 Query 6301 ATTGAATGTAATATTTTCGATTTTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGC 6360 ||| |||| || ||| |||||||| |||||||||||| |||||||||| ||||||| Sbjct 41233226 ATTATCTGTAGTACTTTTCATTTTATTTCAAATCTCCCTTAACTAGGCCTTACTACCCGC 41233285 Query 6361 CAGTACCT--TATATTTA 6376 ||||| ||||||| Sbjct 41233286 AGTTACCTAAGATATTTA 41233303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68313138725568