Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 2e-13 >seq7 Length=109384913 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CC 21585 ||||| | || ||||| | |||| |||||| |||||||| |||| ||||| ||| || Sbjct 105115034 AATGTGAGGCCTGGCATAAGACCTCGCTTTTTCAACCAAAAAATTGCAGCAAA-GCTACC 105115092 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATT 21644 ||||| || ||||||||||| || |||||||||| || ||||| ||| |||| | | | Sbjct 105115093 AGAAAAAAAGATGCCCTCAACAGCTGCAAATGCAATTATCCGTTCTCCGAATGTGGCAGT 105115152 Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704 || | ||||||| | ||||| | |||||| | || | ||| || || | Sbjct 105115153 CTCGGAGC-TGATCCATTCTAAGGCCCAATCTGCCTTCTTCTTCACACATGGCATGGTTT 105115211 Query 21705 CAATAGCTTTTAAAAG 21720 |||| || || ||||| Sbjct 105115212 CAATTGCATTGAAAAG 105115227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||| || ||||||| || |||||||| ||||| || || ||||| | || || Sbjct 105111368 TTAAAACTCGGCATCTAGTGTAAAAACATTGTCTTCCTTGTTCGACATTACACCACACTT 105111427 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 || || || | ||| | ||||| ||||| || ||||| || || | ||| || ||| Sbjct 105111428 CTGGTATTCGCCCACTTTCTTTTCAAAAAAGTTAGTCTTCCCCTCAAGTGAAATGTGTTC 105111487 Query 21247 CATAAAATCAAATGGATTTTC 21267 ||| || |||||||||||||| Sbjct 105111488 CATGAAGTCAAATGGATTTTC 105111508 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||||||||| ||||| || || || || ||||| ||||| || ||||| || || || Sbjct 105116719 ACTATACATTTCTGAATGAATGTTCTCGATGGCTATTTGAAAACCATAAAAGCACCTCGC 105116778 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | ||| || || | |||| || | | ||||||||| || || ||||| Sbjct 105116779 TTCGGTCACTTGCACTTCTTGACTGAATCTTTCCACAAGGTTTTCATTAACAATGCCATC 105116838 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTG---TTAA 21942 | || ||||| ||||| | | || ||| || ||||||| || | ||||| | | Sbjct 105116839 AGATGCRGCAAAGAATGCTAGGACATGTTTGATGAAATATC--TC-TCATCTGGCTTCAG 105116895 Query 21943 TTTTTTCCAATCTAATAAATCTTTT 21967 || |||||||| | ||||| ||| Sbjct 105116896 TTGTTTCCAATGGGACAAATCCTTT 105116920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531816121392640