Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 338 8e-88 seq7 141 1e-28 >seq4 Length=10813142 Score = 338 bits (374), Expect = 8e-88 Identities = 735/1096 (67%), Gaps = 16/1096 (1%) Strand=Plus/Minus Query 61989 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 62048 ||||| || |||||||||||| | | ||| || || || || ||||| ||||| |||||| Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTT 9996600 Query 62049 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 62108 ||||| || | |||| ||||| ||||||||| || || || | || | || || Sbjct 9996599 TTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCA 9996540 Query 62109 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62168 || || ||||| || | || || |||||||| ||||| || || | ||||| ||||| Sbjct 9996539 GCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATC 9996480 Query 62169 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 62228 | | |||| ||| || | ||| ||||||| || ||||| | ||| || || || Sbjct 9996479 TGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCC 9996420 Query 62229 GGAAG---GTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62285 || | || | | || || ||||| || | | || || | || || || ||| Sbjct 9996419 GGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTCA 9996360 Query 62286 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 62345 | ||| || |||||| | | | || || || || | || || ||||| || Sbjct 9996359 CTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAAC 9996300 Query 62346 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTA 62405 ||||| || | ||| || |||||||| ||||| |||| || || || | || ||||| Sbjct 9996299 TCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTG 9996240 Query 62406 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62465 ||||| | || || ||||| || || || ||||||||||| | | | | ||||| Sbjct 9996239 TTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTC 9996180 Query 62466 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 62523 | ||| |||| | | ||||| | |||||||| |||||| ||| | | | || Sbjct 9996179 ACACC--ATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAG 9996122 Query 62524 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTA 62582 || || |||||||| ||||| | | || ||||| |||| || Sbjct 9996121 TCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGAC-ATCCTTCATACGTC 9996063 Query 62583 TCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATG 62642 |||||||| || ||||| || || |||||||| ||||| ||||| ||||| |||||| Sbjct 9996062 TCGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATG 9996003 Query 62643 GTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG 62702 ||||| || || | ||| | | ||| || || || || ||| | Sbjct 9996002 GTTTCAAAAATTTGAGCATTCAATTTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCATT 9995943 Query 62703 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62762 || || || || || || | ||||| | || || || || |||| || ||| | || Sbjct 9995942 AGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGTTG 9995883 Query 62763 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822 |||| || ||||| | || ||||| ||||| |||||| || || || ||||| || Sbjct 9995882 GAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCCTC 9995823 Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGCCCATCTATTAC 62878 | || |||| || | ||| || |||| |||||| | | | ||| | | || Sbjct 9995822 GTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAAT-TAAC 9995764 Query 62879 AAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC-AT 62937 ||||||||| | ||||| || |||| ||||| || || | ||||| || | || || Sbjct 9995763 AAACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGG-TGAGCTAT 9995705 Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997 ||| | ||||| ||||| ||||| ||||||||||| ||||| | ||| || || || Sbjct 9995704 ATTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTTGG 9995645 Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057 ||| ||||||| |||||||||||||| ||| | || || || ||||| | ||| || | Sbjct 9995644 ACTTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGACT 9995585 Query 63058 CTATAATCGCTTTCCA 63073 | || || || | ||| Sbjct 9995584 CRATGATAGCGTGCCA 9995569 Score = 113 bits (124), Expect = 6e-20 Identities = 168/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 |||||||| || ||||| | ||||| || ||||| || || || | || ||| || | Sbjct 9984178 TTGTTTCCCCCTTGATCAACATATCTCGCYGTGTTGTTGTACACCCGCAGCATAGGGACT 9984119 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || ||| | ||||| || || | || ||||||||| | |||||||| | Sbjct 9984118 ATCCCATTGGATGTCCCATTTGTCCCAGCAATGTAGCTTCCAGTTGCACGAATGC----A 9984063 Query 63486 ATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 || ||| ||||| ||||||||||| ||| || |||| ||| || | || | || Sbjct 9984062 ATGGATGTTAAGACCAATTCCCCCTGCAGATTTGGAAATTAGTGCACACTGCTTAAGTGT 9984003 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGA 63595 ||||||||| || || ||||| ||||| ||| |||||| || ||||| || || Sbjct 9984002 GTCATAGATTCCTTCAATGCTGTCATCTTTCATTGTTAA-CAGGAAACAACTGGA 9983949 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 ||| || || ||||||||||| ||||| || || ||||| || || || | |||||||| Sbjct 9975103 TTTCTTAGTCTCCTTGTGTAGGTTTGACACAGCGATTCTAGCAGCAAGGACAGCATAATC 9975044 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 || |||| || || ||||| || |||| || ||||| ||||||| || || || Sbjct 9975043 TGGGTGTTTGGTTGTCATTGTGGCGGCAGTTTCAGCAGCCAGGTTGTCCAACTCGACGGT 9974984 Query 64085 TGTTACTCCATTATATATTCCTTGAATAACCTTCA 64119 ||| || ||| ||||| ||| ||||| |||| Sbjct 9974983 TGTGACACCAGAATATAGTCCACTTATAACTTTCA 9974949 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 |||| | |||||| || ||||||||||| || || ||| |||||||||| | | Sbjct 9986452 ACTCTCTCCATAAATAGGTCAGGAATCCACAGGGCATAAAACAGATCTCTGGCGCGGACT 9986393 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 ||||| || ||||| || ||||| || || |||||| | | | ||||| |||||| || Sbjct 9986392 TCCTCCTTGCCTGTGTTTTTTTTCAGGTCCAGGAACTCAAACACATCAGCATGCCATGGC 9986333 Query 63336 TCCAAGTATATGGC 63349 |||| ||| || || Sbjct 9986332 TCCAGGTAAATTGC 9986319 >seq7 Length=109384913 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33561 ACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 33620 ||| || || ||||| ||||| || | |||||||||||||| ||||||||||| || || Sbjct 105116689 ACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGAT 105116748 Query 33621 GGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCG 33680 ||| || ||||| || || || || || || ||||| | || |||||| || |||| Sbjct 105116749 GGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCT 105116808 Query 33681 TTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 33740 |||| | | |||||||| || || || ||| || ||||| || || | |||||||| Sbjct 105116809 TTCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTT 105116868 Query 33741 TATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 || |||||| | || ||||| | |||| ||||||| Sbjct 105116869 GATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCAAT 105116906 Score = 96.9 bits (106), Expect = 4e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 || |||| |||| || |||||||| | ||||||||||| ||||| ||||||||||||| Sbjct 105117149 TACCTTT-GATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACA 105117207 Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 | | ||| ||||||| |||| || ||||| | |||||| | ||||||||| Sbjct 105117208 TTTGCCAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTT 105117260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622848026805760