Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 127 5e-24 seq7 93.3 1e-13 >seq4 Length=10813142 Score = 127 bits (140), Expect = 5e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 364074 GTATGAATCGGAGGGAAAGGCTCGTAAGACAA-TTCCCGCACAGAAGCTATGGTTTGCCA 364132 |||||| || || || | | | |||| |||| || |||||| |||| ||| || | Sbjct 9995520 GTATGAGTCTGAAGGCAGGTAT-GTAAAACAAGTTAAGGCACAGCAGCTTTGGCACGCTA 9995578 Query 364133 TCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACC 364192 |||| || || ||| | || ||||| |||||||| ||| | || || ||| | || ||| Sbjct 9995579 TCATYGAGTCCCAGGTAGAAACAGGGACACCCTACATGCTTTATAAGGATGCATGTAACA 9995638 Query 364193 GCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTA 364252 | ||||||||||||||| | ||||| || || || ||||| ||||| || |||||| Sbjct 9995639 GGAAGTCCAACCAGCAGAATCTTGGAACGATCAAGTGTAGCAATCTATGCACAGAGATTG 9995698 Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 | ||||| | | | || || |||| ||| || |||||| | || ||||| || Sbjct 9995699 TGGAATATAGCTCACCTGATGAGATTGCTGTGTGTAACTTGGCCTCGATTGC 9995750 Score = 98.7 bits (108), Expect = 3e-15 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||| || || ||| |||||| || || ||| || || |||| ||||||||||||| | Sbjct 9983954 TTGTTTCCTGTTAACAATGAAAGATGACAGCATTGAAGGAATCTATGACACACTTAAGCA 9984013 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 ||||| || |||||||| |||||| ||||||||| | ||||| ||||||| Sbjct 9984014 GTGTGCACTAATTTCCAAATCTGCAGGGGGAATTGGTCTTAACATCCATTGCATTCGTGC 9984073 Query 363726 -ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 || | | || |||||| || || | |||| | || |||||| | || || ||||| Sbjct 9984074 AACTGGA-AGCTACATTGCTGGGACAAATGGGACA-TCCAATGGGATAGTCCCTATGCTG 9984131 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGA 363825 || |||| |||| || ||||| || || || || || ||| Sbjct 9984132 CGGGTGTACAACAACACRGCGAGATATGTTGATCAAGGGGGA 9984173 >seq7 Length=109384913 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTC---ATTCGCGGAA 22491 ||||| |||||||||||||| | ||||||| | | || | | ||||| ||| Sbjct 105115194 AAGAAGAAGGCAGATTGGGCCTTAGAATGGATCAGCTCCGAGACTGCCACATTCGGAGAA 105115135 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAAT 22550 || | ||||||||||| | ||||| ||||| || |||||||| ||| ||| |||||| Sbjct 105115134 CGGATAATTGCATTTGCAGCTGTTGAGGGCATCTTTTTTTCTGGTAGC-TTTGCTGCAAT 105115076 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 |||||| | ||||| || | ||||||| || || || || ||||| | || Sbjct 105115075 TTTTTGGTTGAAAAAGCGAGGTCTTATGCCAGGCCTCACATTCAGCAATGAACTCATCTC 105115016 Query 22611 CCGAGATGAGG 22621 ||||||||||| Sbjct 105115015 CCGAGATGAGG 105115005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303140918759552