Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8295 131 1e-25 seq1861 113 3e-20 seq10 86.0 4e-12 >seq8295 Length=1845 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 144 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 85 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 84 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 50 >seq1861 Length=69843 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| |||||| |||||||||||||| ||||||||||| || ||| | || Sbjct 47390 AAGCCCGTTCTCTTGGCAGTGGTTTCGCTAGAAAGTAGATAGGGACAGAGGGAATTTAGT 47331 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| |||||||||||||||||| Sbjct 47330 TAATCCATTCATGCGCATCACTAATTAGATGACGA 47296 >seq10 Length=51758932 Score = 86.0 bits (94), Expect = 4e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 6167 GACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCAT 6226 || ||| |||||||| || | || || || |||||||| ||||| ||||| || | Sbjct 5483296 GAGCCTAAACGTAAACCGAAGCGTCAGCGATGCTTTCTACCGATACAAGATGCCCCGGCT 5483355 Query 6227 CTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGA 6286 | |||||||| ||||| || || || || || || || ||||||||||||||| | || Sbjct 5483356 CATTGCCAAGGTGGAGGGAAAAGGCAATGGCATCAAGACTGTCATTGTCAACATGGCGGA 5483415 Query 6287 AGTCGCTAAGGC 6298 || || ||||| Sbjct 5483416 CGTAGCCAAGGC 5483427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334895209495616