Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 333 3e-86 seq7 154 2e-32 >seq4 Length=10813142 Score = 333 bits (368), Expect = 3e-86 Identities = 737/1098 (67%), Gaps = 20/1098 (2%) Strand=Plus/Minus Query 61844 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 61903 ||||| || |||||||||||| | | ||| || || || || ||||| ||||| |||||| Sbjct 9996659 TCCAAAGTAAATTGAATGGGATCAGCTGCTGGCTTTGTCCGCAGATAATACATCCCCGTT 9996600 Query 61904 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 61963 ||||| || | |||| ||||| ||||||||| || || || | || | || || Sbjct 9996599 TTTAGGCCCAATTTCCAACCGTAGAAATGCATAGATGTGAGCTTACCAAAATTTGGCTCA 9996540 Query 61964 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62023 || || ||||| || | || || |||||||| ||||| || || | ||||| ||||| Sbjct 9996539 GCAATGTGGATGTTGAGTGACTGGCTTTGATCAATGAATGCACCACGATCTGCGGCCATC 9996480 Query 62024 TTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 62083 | | |||| ||| || | ||| ||||||| || ||||| | ||| || || || Sbjct 9996479 TGGAGTATCGCCTTCTGAGAAATCTCCCAAACGGTCTTATACAGAGCCTTTATGTCCTCC 9996420 Query 62084 GGAAG---GTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62140 || | || | | || || ||||| || | | || || | || || || ||| Sbjct 9996419 GGGATTCTGTCTATGTTTTGGATGGACCCTTTGTTTTTCAGTATTGTGTTTTTCATTTCA 9996360 Query 62141 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 62200 | ||| || |||||| | | | || || || || | || || ||||| || Sbjct 9996359 CTGTCCCACAAACCAAGCTCGGTGAGATCCCTTAGCAGGTGATGGTTCACGACTTGGAAC 9996300 Query 62201 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 62260 ||||| || | ||| || |||||||| ||||| |||| || || || | || ||||| Sbjct 9996299 TCTCCTGATAGTACCCTTCGAGTGTAGATATTCGTGGTGTATGGCTCAAAGGATTCATTG 9996240 Query 62261 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62320 ||||| | || || ||||| || || || ||||||||||| | | | | ||||| Sbjct 9996239 TTTCCGAGTATCTGTGCAGTAGAAGCTGTAGGCATAGGTGCAAGAAGAAGAGAGTTTCTC 9996180 Query 62321 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 62378 | ||| |||| | | ||||| | |||||||| |||||| ||| | | | || Sbjct 9996179 ACACC--ATGTGCAGCAATTTTTTGTTTTAGAGCCGCCCAATCCCACAAAGMAGTAGGAG 9996122 Query 62379 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTA 62437 || || |||||||| ||||| | | || ||||| |||| || Sbjct 9996121 TCACACCCCACATGTCGTACTGAAGAATACCCTTACTAACTGGAC-ATCCTTCATACGTC 9996063 Query 62438 TCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATG 62497 |||||||| || ||||| || || |||||||| ||||| ||||| ||||| |||||| Sbjct 9996062 TCGTATGGCCCCAGTTTCTCTGCAAGCTCACAACTAGCCTCCAATGCCCCGTAGTAAATG 9996003 Query 62498 GTTTCGAAGATCTTCTTATTTAGATCTTGCGCTT--CCAGGCTATCAAATGGATAATTTA 62555 ||||| || || | ||| | || ||||| || || || || ||| | Sbjct 9996002 GTTTCAAAAATTTGAGCATTCA-AT-TTGCGTGAACCCTCACTGTCGAAAGGAAGCCGCA 9995945 Query 62556 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 || || || || || || | ||||| | || || || || |||| || ||| | | Sbjct 9995944 TTAGGATGAAGGCATCGGCCAGACCTTGGATTCCGATGCCAATGGGTCGGTGCCTCATGT 9995885 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 | |||| || ||||| | || ||||| ||||| |||||| || || || ||||| | Sbjct 9995884 TGGAGAGTTTGGCTTCAGCAACTGGATAGTAATTGGCATCTATGATCTTGTTCAGATTCC 9995825 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGCCCATCTATT 62731 | | || |||| || | ||| || |||| |||||| | | | ||| | | Sbjct 9995824 TCGTCACTAGTTTGGATACGTTCTTTAGCTTGACAAAATCGTAAGAGTTGTCCAAAT-TA 9995766 Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC- 62790 ||||||||||| | |||| || |||| ||||| || || | ||||| || | || Sbjct 9995765 ACAAACATGTTGACGGCAATCGAGGCCAAGTTACACACAGCAATCTCATCAGG-TGAGCT 9995707 Query 62791 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 ||||| | ||||| ||||| ||||| ||||||||||| ||||| | ||| || || || Sbjct 9995706 ATATTCCACAATCTCTGTGCATAGATTGCTACACTTGATCGTTCCAAGATTCTGCTGGTT 9995647 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 ||| ||||||| |||||||||||||| ||| | || || || ||||| | ||| || Sbjct 9995646 GGACTTCCTGTTACATGCATCCTTATAAAGCATGTAGGGTGTCCCTGTTTCTACCTGGGA 9995587 Query 62911 TTCTATAATCGCTTTCCA 62928 || || || || | ||| Sbjct 9995586 CTCRATGATAGCGTGCCA 9995569 Score = 122 bits (134), Expect = 1e-22 Identities = 170/235 (72%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 |||||||| || ||||| | ||||| || ||||| || || || | || ||| || | Sbjct 9984178 TTGTTTCCCCCTTGATCAACATATCTCGCYGTGTTGTTGTACACCCGCAGCATAGGGACT 9984119 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||||||||| ||||| ||||| | || ||||||||| | |||||||| | Sbjct 9984118 ATCCCATTGGATGTCCCATTTGTCCCAGCAATGTAGCTTCCAGTTGCACGAAT----GCA 9984063 Query 63341 ATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 || ||| ||||| ||||||||||| ||| || |||| ||| || | || | || Sbjct 9984062 ATGGATGTTAAGACCAATTCCCCCTGCAGATTTGGAAATTAGTGCACACTGCTTAAGTGT 9984003 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGA 63450 |||||||| || || || || ||||| ||| |||||| || ||||| || || Sbjct 9984002 GTCATAGATTCCTTCAATGCTGTCATCTTTCATTGTTAA-CAGGAAACAACTGGA 9983949 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 |||| | |||||| || ||||||||||| || || ||| |||||||||| | | Sbjct 9986452 ACTCTCTCCATAAATAGGTCAGGAATCCACAGGGCATAAAACAGATCTCTGGCGCGGACT 9986393 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 ||||| || ||||| || ||||| || || |||||| | | | ||||| |||||| || Sbjct 9986392 TCCTCCTTGCCTGTGTTTTTTTTCAGGTCCAGGAACTCAAACACATCAGCATGCCATGGC 9986333 Query 63191 TCCAAGTATATGGC 63204 |||| ||| || || Sbjct 9986332 TCCAGGTAAATTGC 9986319 >seq7 Length=109384913 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 32918 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 32977 ||| || || |||||||||||||| | |||||||||||||| ||||||||||| || || Sbjct 105116689 ACTGTCATTCACATATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGAT 105116748 Query 32978 GGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCG 33037 ||| |||||||| || || ||||| || || ||||| | || |||||| || |||| Sbjct 105116749 GGCTATTTGAAAACCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCT 105116808 Query 33038 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 33097 ||| | | |||||||| || || || ||| || ||||| || || | |||||||| Sbjct 105116809 TTCCACAAGGTTTTCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTT 105116868 Query 33098 TATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33135 || |||||| | || ||||| | |||| ||||||| Sbjct 105116869 GATGAAATATCTCTCATCTGGCTTCAGTTGTTTCCAAT 105116906 Score = 104 bits (114), Expect = 3e-17 Identities = 92/114 (81%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33201 || |||| |||| || |||||||| | ||||||||||| ||||| ||||||||||||| Sbjct 105117149 TACCTTT-GATAGGTCAACTTCTTCTGCAGTCCAAAATGAAGCCTCAGCCTTTTTATACA 105117207 Query 33202 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 | | ||| |||||||| |||| ||| || || | |||||| | |||||||||| Sbjct 105117208 TTTGCCAAATGTCATGGTATTCAATCGGGAAGACAACAAAACGCTTTGGATTTT 105117261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633531125785600