Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=39772498 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||| | |||||||| |||| ||| | ||||| || |||| Sbjct 4313070 AATGCAAATCTTCGTCAAGACTCTCACCGGTAAGACCATTACACTGGAAGTAGAAGCGTC 4313129 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || |||||| | || |||| |||| || ||||| ||||| || || || || Sbjct 4313130 TGATACAATCGAG--AATGTAAAAGCTAAAATCCAG-GACAAGGAAGGAATACCTCCAGA 4313186 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | || ||||||||||||||| | || |||| | || | || || Sbjct 4313187 TCAACAGAGACTAATYTTTGCCGGCAAACAACTTGAGGATGGAAGAACACTTTCAGACTA 4313246 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || |||||||| || || ||| | || || Sbjct 4313247 CAACATCCAGAAAGAATCAACTCTTCATCTGGTTCT 4313282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| |||||| |||| Sbjct 2636932 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCA 2636873 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| |||| || || | ||| ||||| || || || || || ||||| Sbjct 2636872 GACACTATCGAGAATGTGAAGGCCAAGATTCA-GGACAAGGAGGGAATCCCCCCAGACCA 2636814 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || | ||||| | ||||| | ||| ||||| Sbjct 2636813 GCAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 2636754 Query 25178 TATTCAAAA 25186 ||||| || Sbjct 2636753 CATTCAGAA 2636745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| |||||| || | Sbjct 4310778 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGCC 4310837 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| |||| || || | ||| ||||| || || || || || ||||| Sbjct 4310838 GACACTATCGAGAATGTGAAGGCCAAGATTCA-RGACAAGGAGGGAATCCCCCCAGACCA 4310896 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || | ||||| | ||||| | ||| ||||| Sbjct 4310897 GCAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 4310956 Query 25178 TATTCAAAAAG 25188 ||||| |||| Sbjct 4310957 CATTCAGAAAG 4310967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433260738827840