Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7 149 7e-31 seq4962 118 1e-21 seq68 111 2e-19 seq5 111 2e-19 >seq7 Length=109384913 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || ||||| || || | |||||||||||||| | ||||| | || ||||| || || Sbjct 105115007 TCATCTCGGGAGATGAGTTCATTGCTGAATGTGAGGCCTGGCATAAGACCTCGCTTTTTC 105115066 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | |||||| |||| |||||| |||||||||||||| || || || || ||||||||||| Sbjct 105115067 AACCAAAAAATTGCAGCAAAGCTACCAGAAAAAAAGATGCCCTCAACAGCTGCAAATGCA 105115126 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 | || ||||| | || | || | | ||||||||||| ||| |||||||| || Sbjct 105115127 ATTATCCGTTCTCCGAATGTGGCAGTCTCGGAGCTGATCCATTCTAAGGCCCAATCTGCC 105115186 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 || ||||| | ||| || | ||||| || || || || |||||||| Sbjct 105115187 TTCTTCTTCACACATGGCATGGTTTCAATTGCATTGAAAAGGTAATC 105115233 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 93365 TATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAAT 93424 |||||||| || | ||| ||||||||| ||||| | ||||| || || ||||| || Sbjct 105116702 TATGTATCAATGAGGAGACTATACATTTCTGAATGAATGTTCTCGATGGCTATTTGAAAA 105116761 Query 93425 CCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTT 93484 || || || || || ||||| || | |||||||||||| ||||| || || || ||| Sbjct 105116762 CCATAAAAGCACCTCGCTTCGGTCACTTGCACTTCTTGACTGAATCTTTCCACAAGGTTT 105116821 Query 93485 TCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTC 93544 ||||| || || ||||| ||||| ||||| || || | | ||| || || |||| | || Sbjct 105116822 TCATTAACAATGCCATCAGATGCRGCAAAGAATGCTAGGACATGTTTGATGAAATATCTC 105116881 Query 93545 TCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589 ||||| || || | | ||||| ||| | ||| ||| ||||| Sbjct 105116882 TCATCTGGCTTCAGTTGTTTCCAATGGGACAAATCCTTTAAAAGA 105116926 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 66585378 GTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGCG 66585319 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 66585318 TGGGTTCGAACCCCACATCTGACA 66585295 Score = 107 bits (118), Expect = 2e-18 Identities = 84/98 (86%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||| |||||||||||||||||||||||||| ||||| |||||||| | ||| Sbjct 66587609 TAAAGTCAGATTGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCTCGAAAGGG 66587550 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACA-AATTATTAT 126356 ||||||||||||||||||||| ||| || | || |||| Sbjct 66587549 AGCGTGGGTTCGAACCCCACATCTGGCATACTTTTTAT 66587512 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/109 (77%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCAC 92800 |||| || || |||||||||||||| |||||||| | || || ||| ||||||| Sbjct 105111367 ATTAAAACTCGGCATCTAGTGTAAAAACATTGTC---TTCCTTGTTCGACATTACACCAC 105111423 Query 92801 ATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 | || |||||||| || ||||| |||||||| || || ||||| || || Sbjct 105111424 ACTTCTGGTATTCGCCCACTTTCTTTTCAAAAAAGTTAGTCTTCCCCTC 105111472 >seq4962 Length=14760 Score = 118 bits (130), Expect = 1e-21 Identities = 93/109 (85%), Gaps = 7/109 (6%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 || ||||| ||||||||| |||||||||||||||| ||||| |||||||||| |||| Sbjct 13058 ACTGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGAAAGGGA 12999 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||||||||||||| |||||||| |||| || |||||||| Sbjct 12998 GCGTGGGTTCGAACCCCACATCTGACAAA-TATTTTT----TTTTTGTT 12955 >seq68 Length=648180 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 ||||||||||||||||||| |||||||| ||| ||||| ||| ||||||| ||||||| Sbjct 634288 GTCAGGTTGGCCGAGTGGTTTAAGGCGCTAGACTTAAGTTCTAGTTCCCTACAGGGAGCG 634347 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| |||||||||||||| Sbjct 634348 TGGGTTCGAATCCCACACCTGACAA 634372 >seq5 Length=36881487 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||| ||||||||| |||||||||||||||| ||||| |||||||||| |||||| Sbjct 15770845 AGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGAAAGGGAGC 15770904 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||| |||||| Sbjct 15770905 GTGGGTTCGAACCCCACATCTGACA 15770929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556772147760640