Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 seq129 95.1 1e-14 >seq2 Length=39772498 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | |||||||| || | || || ||||| ||| | | Sbjct 4313071 ATGCAAATCTTCGTCAAGACTCTCACCGGTAAGACCATTACACTGGAAGTAGAAGCGTCT 4313130 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || |||||||| || || || || |||||| Sbjct 4313131 GATACAATCGAGAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATACCTCCAGATCAA 4313190 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||||||||| | |||||| | || | || || |||||| Sbjct 4313191 CAGAGACTAATYTTTGCCGGCAAACAACTTGAGGATGGAAGAACACTTTCAGACTACAAC 4313250 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| || | ||| | ||| | || | || || ||| Sbjct 4313251 ATCCAGAAAGAATCAACTCTTCATCTGGTTCTTCGCCTTCGTGGTGGT 4313298 Score = 89.7 bits (98), Expect = 4e-13 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || ||||| | | Sbjct 4310777 GATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGGCGGC 4310836 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || || ||||| ||||||||||| || || || || || Sbjct 4310837 CGACACTATCGAGAATGTGAAGGCCAAGATTCARGACAAGGAGGGAATCCCCCCAGACCA 4310896 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || || || ||||| ||| | || || |||||| ||||||| ||||| Sbjct 4310897 GCAGCGACTCATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 4310956 Query 22398 CATTCAAAAAG 22408 |||||| |||| Sbjct 4310957 CATTCAGAAAG 4310967 >seq129 Length=450478 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || ||||| || || |||||||| || |||||||||||||| ||| | || ||| |||| Sbjct 101510 GGGATTCCCCCTGACCAACAACGGCTAATATTTGCCGGCAAGCAGCTTGAAGATGGCCGC 101451 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| | || ||||||||||| || ||||| ||| |||| || || |||| ||||| Sbjct 101450 ACCTTGTCTGATTACAACATACAGAAAGAGAGTACCTTACACTTGGTACTGCGCCTGCGC 101391 Query 22441 GGAGG 22445 || || Sbjct 101390 GGTGG 101386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419662849819840