Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Timema_20cristinae_20[genbank_20GCA_5F002009905.3_202017-04-13] 12,736 sequences; 1,042,628,579 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3218 98.7 2e-15 seq2991 98.7 2e-15 seq1532 98.7 2e-15 seq7 98.7 2e-15 seq5 98.7 2e-15 seq3 98.7 2e-15 seq6004 96.9 7e-15 seq1565 91.5 3e-13 seq500 84.2 4e-11 >seq3218 Length=36788 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 36587 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 36528 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 36527 CCCACGTTGGGC 36516 >seq2991 Length=42102 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 715 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 656 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 655 CCCACGTTGGGC 644 >seq1532 Length=80857 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 49841 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 49900 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 49901 CCCACGTTGGGC 49912 >seq7 Length=109384913 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 6331716 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 6331775 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 6331776 CCCACGTTGGGC 6331787 >seq5 Length=36881487 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 25205262 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 25205203 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 25205202 CCCACGTTGGGC 25205191 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 ||||| || ||||||| |||| ||||||||||||||||||||||||||| |||||||||| Sbjct 31388393 ATGTCCCTTTGGCGCAGTGGAAAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGA 31388452 Query 142111 CCCCCGCCAGAGA 142123 |||||| || || Sbjct 31388453 ACCCCGCAAGGGA 31388465 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 31377946 GTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 31378005 Query 142113 CCCGCCAGAGA 142123 ||||| || || Sbjct 31378006 CCCGCAAGGGA 31378016 >seq3 Length=34716904 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 6747375 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 6747434 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 6747435 CCCACGTTGGGC 6747446 >seq6004 Length=7785 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||| ||| Sbjct 1052 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCRAGC 1111 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1112 CCCACGTTGGGC 1123 >seq1565 Length=82145 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 36045 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGAGTCGTGGGTTCGAGC 35986 Query 142564 CCCAC 142568 ||||| Sbjct 35985 CCCAC 35981 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||| | |||||||| |||| | ||||||||| |||||| Sbjct 50 GCCCGTCTAGCTCAGTCGGTAGAGCACGAGACTCTTGATCTCGGGGTCGTGGGCTCGAGC 109 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 110 CCCACGTTGGGC 121 >seq500 Length=196945 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCC 142115 || ||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||| Sbjct 64985 CTTTGGCGCAGTGGAAAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGACCCCC 64927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027669077590976